Skip to content

Pull requests: nf-core/modules

New pull request New
149 Open 7,465 Closed
149 Open 7,465 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Update quay.io/biocontainers/antismash Docker tag to v8.0.4 size/xs
#10289 opened Mar 1, 2026 by renovate bot Loading…
2 tasks
Update pre-commit hook astral-sh/ruff-pre-commit to v0.15.4 size/xs
#10288 opened Mar 1, 2026 by renovate bot Loading…
2 tasks
Pin quay.io/biocontainers/antismash Docker tag to 9977bae size/xs
#10287 opened Mar 1, 2026 by renovate bot Loading…
2 tasks
Add new module csvtk/mutate2
#10284 opened Feb 27, 2026 by fellen31 Loading…
17 tasks
Add new sbwf BAM_VARIANT_CALLING_MPILEUP_BCFTOOLS new subworkflow
#10283 opened Feb 27, 2026 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
2
adding kmergenie module
#10281 opened Feb 27, 2026 by LiaOb21 Loading…
12 of 17 tasks
1
update module: crabz/decompress
#10268 opened Feb 25, 2026 by camlloyd Loading…
3 of 17 tasks
1
chore(modules): migrate adapterremoval & adapterremovalfixprefix to new version output format
#10266 opened Feb 25, 2026 by maxcumminsandfred-lab Loading…
3 of 17 tasks
chore(modules): migrate abricate/summary to new version output format
#10265 opened Feb 25, 2026 by maxcumminsandfred-lab Loading…
2 of 17 tasks
3
chore(modules): migrate abricate/run to new version output format
#10264 opened Feb 25, 2026 by maxcumminsandfred-lab Loading…
3 of 17 tasks
module update: subread/featurecounts - Bump container versions #10249
#10250 opened Feb 25, 2026 by PeterKneale Loading…
5 tasks done
1
6
Add nextflow-lint pre-commit hook
#10241 opened Feb 24, 2026 by mashehu Loading…
12
Update multivcfanalyzer module
#10137 opened Feb 23, 2026 by TCLamnidis Loading…
2 of 17 tasks
1
Rmats work in progress PR
#10128 opened Feb 23, 2026 by akaviaLab • Draft
1 of 17 tasks
2
Integrate multiqcsav into bcl_demultiplex subworkflow size/m
#10117 opened Feb 19, 2026 by delfiterradas • Draft
17 tasks
1
@delfiterradas
4
Paraphase update
#10099 opened Feb 18, 2026 by bagnacan Loading…
3 tasks done
4
Add MacSyFinder modules for model management and protein system detection size/l size/xl
#10074 opened Feb 17, 2026 by Copilot AI • Draft
1
@brovolia
18
new module: gatk4/analyzecovariates new module Adding a new module
#10063 opened Feb 16, 2026 by thomasisensee Loading…
14 tasks done
1
1
Migrate hmtnote to topic versions
#10062 opened Feb 16, 2026 by emmadizdarevic • Draft
17 tasks
Fix labeler workflow for fork PRs using workflow_run pattern
#10045 opened Feb 16, 2026 by Copilot AI • Draft
@ewels
7
Deacon index set operations
#10027 opened Feb 13, 2026 by pmoris Loading…
17 tasks
2
DO NOT MERGE: clean repo, and more strict syntax fixes
#10016 opened Feb 13, 2026 by maxulysse • Draft
17 tasks
1
New module: lsa/cosine (calculate cosine similarity)
#10002 opened Feb 12, 2026 by miguelrosell Loading…
12 tasks done
27
give bwamem2/index a makeover
#9997 opened Feb 12, 2026 by maxulysse Loading…
17 tasks
5
Avoid redundant index steps for shared refs
#9983 opened Feb 12, 2026 by pmoris Loading…
1 of 17 tasks
9
ProTip! Type g i on any issue or pull request to go back to the issue listing page.