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Pull requests: malariagen/malariagen-data-python

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Pull requests list

Handle empty SNP/AA results in allele frequency tests
#1066 opened Mar 6, 2026 by adilraza99 Loading…
1
Optimize quarter column computation using vectorized NumPy operations
#1065 opened Mar 6, 2026 by vshnvii Loading…
1
Added LD pruning support and PLINK export for ADMIXTURE analysis
#1063 opened Mar 6, 2026 by rehanxt5 Loading…
1
1
Add VcfConverter module to export biallelic SNPs to Variant Call Format
#1061 opened Mar 6, 2026 by shauryam2807 Loading…
1
feat: add VCF export functionality resolves #1054
#1060 opened Mar 6, 2026 by Tanisha127 Loading…
1 of 2 tasks
feat: add LD pruning and admixture data preparation
#1059 opened Mar 6, 2026 by 31puneet Loading…
1
1
Add example notebook demonstrating genomic data exploration using mal…
#1058 opened Mar 6, 2026 by priyarai121 Loading…
1
fix: decode URL-escaped local filesystem paths in _init_filesystem
#1057 opened Mar 6, 2026 by Sharon-codes Loading…
1
1
Add cohort_geometries() to access cohort GeoJSON metadata
#1053 opened Mar 5, 2026 by adilraza99 Loading…
1
Improve robustness of cohorts() metadata access
#1052 opened Mar 5, 2026 by adilraza99 Loading…
1
feat: enhance biallelic_snps_to_plink with sex calls, phenotypes, and…
#1051 opened Mar 5, 2026 by 31puneet Loading…
1
fix: replace print() statements with warnings.warn() in production code
#1050 opened Mar 5, 2026 by suhaan-24 Loading…
1
1
Fix LoggingHelper.set_level() not updating logger level
#1047 opened Mar 5, 2026 by suhr25 Loading…
1
Add NON_SYNONYMOUS_START and NON_SYNONYMOUS_STOP effect classifications (fixes #1045)
#1046 opened Mar 5, 2026 by ZiadXI Loading…
1
Fix incorrect type hint for _aim_metadata_dtype
#1043 opened Mar 5, 2026 by vshnvii Loading…
fix: replace assert isinstance(...) statements with proper TypeError exceptions across codebase
#1042 opened Mar 4, 2026 by suhaan-24 Loading…
1
1
fix: migrate _check_types from typeguard to pydantic TypeAdapter (#484)
#1040 opened Mar 4, 2026 by 31puneet Loading…
Make pytest functions reproducible (1/2)
#1036 opened Mar 4, 2026 by jwgarber Loading…
1
fix: add pytest-cases note to setup instructions (#1029)te
#1031 opened Mar 3, 2026 by Sally-designs Loading…
2
Fix: Resolve TypeError for None variant in plot_frequencies_map_markers (#725)
#1030 opened Mar 3, 2026 by ArnabTechiee Loading…
test(cnv): stabilise simulated high-variance sampling
#1027 opened Mar 3, 2026 by Sharon-codes Loading…
3
fix(veff): handle single-child transcripts consistently
#1026 opened Mar 3, 2026 by Sharon-codes Loading…
5
feat: add input parameter validation to PlasmodiumDataResource public methods
#1024 opened Mar 2, 2026 by suhaan-24 Loading…
1
1
fix: prevent axis flipping in plot_h12_calibration by adding bounds
#1018 opened Mar 2, 2026 by joshitha1808 Loading…
1
feat: add generic Manhattan/QQ plotting helpers for association results
#1017 opened Mar 2, 2026 by Sharon-codes Loading…
1
11
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