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@marbl

MarBL

Maryland Bioinformatics Labs

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  1. CHM13 CHM13 Public

    The complete sequence of a human genome

    1k 100

  2. canu canu Public

    A single molecule sequence assembler for genomes large and small.

    C++ 695 180

  3. Krona Krona Public

    Interactively explore metagenomes and more from a web browser.

    JavaScript 494 108

  4. Mash Mash Public

    Fast genome and metagenome distance estimation using MinHash

    C++ 436 94

  5. verkko verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    Python 382 34

  6. merqury merqury Public

    k-mer based assembly evaluation

    Shell 339 24

Repositories

Showing 10 of 44 repositories
  • T2T-Browser Public

    Genome browser hub for the T2T genomes and resources

    marbl/T2T-Browser’s past year of commit activity
    HTML 27 3 0 0 Updated Mar 9, 2026
  • KOLF2.1J-Diploid-Assembly Public

    The personalized diploid genome of KOLF iPSC cell line

    marbl/KOLF2.1J-Diploid-Assembly’s past year of commit activity
    0 0 0 0 Updated Mar 9, 2026
  • MetagenomeScope Public

    Visualization tool for (meta)genome assembly graphs

    marbl/MetagenomeScope’s past year of commit activity
    Python 39 GPL-3.0 8 128 0 Updated Mar 7, 2026
  • verkko Public

    Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

    marbl/verkko’s past year of commit activity
    Python 382 34 17 1 Updated Mar 5, 2026
  • DJCounter Public

    This repository can be used to calculate the number of DJ counts in the genome aligned to the GRCh38 (broad reference).

    marbl/DJCounter’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Mar 3, 2026
  • anianns Public

    ANI based satellite annotation

    marbl/anianns’s past year of commit activity
    Python 25 0 1 0 Updated Mar 2, 2026
  • TTT Public
    marbl/TTT’s past year of commit activity
    Python 6 0 2 0 Updated Feb 26, 2026
  • canu Public

    A single molecule sequence assembler for genomes large and small.

    marbl/canu’s past year of commit activity
    C++ 695 180 6 2 Updated Feb 24, 2026
  • HG002 Public

    A complete diploid human genome

    marbl/HG002’s past year of commit activity
    144 5 2 0 Updated Feb 22, 2026
  • GQC Public

    Python package for comparing genome assemblies and read data to the diploid Q100 benchmark

    marbl/GQC’s past year of commit activity
    Python 13 1 1 0 Updated Feb 20, 2026

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