Source code for analysis and figure reproduction for Ronan F. Arthur, James H. Jones, Matthew H. Bonds, Yoav Ram, Marcus W. Feldman (2021) Adaptive social contact rates induce complex dynamics during epidemics PLOS Computational Biology, DOI:10.1371/journal.pcbi.1008639
Preprint available on bioRxiv.
This repository includes Python source code and Jupyter notebooks that reproduce the numerical results presented in Figs. 1-4 and supplementray figures.
- SIS model: source code for reproduction of SIS model results.
- SIR model: source code for reproduction of SIR model results.
The source code uses Zulko/ddeint to solve delayed differential equations.
The source code is released under a CC-BY-SA license.