Singularty wrapper to run the Overture SCORE client on HPC via Singularity.
Tested score client: 5.8.1 (tag v5.8.1)
# once
singularity pull score-client_5.8.1.sif docker://overture/score:5.8.1
# create app properties (replace "YOUR_TOKEN" with your real token and your URLs if they differ)
sh make_app_properties.sh --token "YOUR_TOKEN" --metadata-url "https://api.platform.icgc-argo.org/storage-api" --storage-url "https://api.platform.icgc-argo.org/storage-api"
# run a download (replace "score-manifest.tsv" with your manifest file)
sh run_score_download.sh --sif ./score-client_5.8.1.sif --manifest ./score-manifest.tsv --outdir ./out