This repository carries job configuration scripts, log file outputs, and other resources related to bioinformatics data publications from the Thomas E. Wilson laboratory at the University of Michigan from the year 2022 and later.
Top level folders each correspond to one publication named with a keyword and year.
| Keyword | Created | Published | Description |
|---|---|---|---|
| svCapture | 2022 | 2022 | Technical report describing error minimization strategies for finding rare structural variants in NGS capture libraries. |
| CFS-M_phase-PolQ | 2023 | 2024 | Application of svCapture to discover that structural variants at commmon fragile site are created by end joining in M phase. |
Many resources were generated by, or can be used within, the pipelines and apps frameworks and tool suites of the Michigan Data Interface.
- Documentation Website: https://midataint.github.io/
- GitHub Organization: https://github.com/MiDataInt
- Wilson Lab SVX Tools: https://github.com/wilsontelab/svx-mdi-tools
Please see an individual publication for details.
Releases of this repository are linked to Zenodo via the following DOI:
In addition, please cite the specific publication for the data set and code relevant to your work.