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update gbwtgraph to path index bugfix#4895

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dcmonti wants to merge 1 commit intomasterfrom
recombination_alignment
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update gbwtgraph to path index bugfix#4895
dcmonti wants to merge 1 commit intomasterfrom
recombination_alignment

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@dcmonti
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@dcmonti dcmonti commented May 5, 2026

Changelog Entry

To be copied to the draft changelog by merger:

Description

Update gbwtgraph submodule to solve bug in path indexing in the minimizers.
Previously a minimizers with same position and key would have overwritten the paths of all previous occurences. The bugfix avoids it by merging their paths

@jltsiren
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jltsiren commented May 7, 2026

This was included in #4897 that was just merged into master.

@jltsiren jltsiren closed this May 7, 2026
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