v1.14.8

Bug Fixes

• Validate alignment length before GARD submission — reject alignments that are too short for the number of sequences (#841, closes #839)
• Validate branch labels before RELAX submission — require {TEST} annotations in the tree before submitting (#842, closes #840)

v1.14.7

What's New

• Add PRIME (PRoperty Informed Models of Evolution) promotional banners to the homepage — top bar banner and splash card linking to v3.datamonkey.org and the bioRxiv preprint
• Replace the old v3 beta site banner with a PRIME-specific banner
• Fix Observable HQ package integrity hash mismatches in yarn.lock

v1.14.4

What's Changed

• chore: Update hyphy-vision to v2.15.10
• chore: Remove build artifacts from repo and update .gitignore

🤖 Generated with Claude Code

v1.14.3 - difFUBAR Stats Integration

Changes in v1.14.3

Features

• Stats Page: Added difFUBAR to the usage statistics dashboard
  • Users can now view difFUBAR usage analytics alongside other analyses
  • Includes weekly job completion charts, sequence/site distributions, and scatter plots
  • Access available at /stats with difFUBAR tab

Internal Improvements

• Enhanced stats component to include difFUBAR method
• Rebuilt production assets with updated React components

This patch release improves platform monitoring and provides visibility into difFUBAR usage patterns.

v1.14.2 - difFUBAR Grid Points Fix

Changes in v1.14.2

Bug Fixes

• difFUBAR: Fixed grid points default from 20 to 6 to match original Julia implementation
  • Verified against CodonMolecularEvolution.jl source code (line 320 in difFUBAR.jl)
  • Ensures consistency between Julia and JavaScript implementations
  • Maintains original algorithm's intended parameters

Internal Improvements

• Removed user control of grid points parameter in difFUBAR (as intended)
• Updated documentation with verified source references
• Enhanced results display to show correct default value

This patch release ensures difFUBAR behaves consistently with the original research implementation.

v1.14.1: difFUBAR Beta Release

What's Changed

Features

• 🏷️ Mark difFUBAR as beta across the site
  • Add beta badges to difFUBAR in navigation dropdowns
  • Add beta badge to difFUBAR page header
  • Update difFUBAR title in analysis tree to include beta label

Bug Fixes

• 🐛 Fix React component naming from difFUBAR to DifFUBAR (PascalCase)

Technical

• Bump version to 1.14.1

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Full Changelog: v1.14.0...v1.14.1

1.14.0

What's Changed

• Add difFUBAR frontend implementation by @stevenweaver in #795
• Feature/dif fubar frontend by @stevenweaver in #808

Full Changelog: 1.13.1...1.14.0

1.13.1

Full Changelog: 1.13.0...1.13.1

1.13.0

What's Changed

• #752 -- New analysis options by @stevenweaver in #767

Full Changelog: 1.12.0...1.13.0

1.12.0

What's Changed

• Bump export-to-csv from 0.2.1 to 1.0.0 by @dependabot in #708
• Bump export-to-csv from 1.0.0 to 1.1.0 by @dependabot in #710
• Bump export-to-csv from 1.1.0 to 1.2.1 by @dependabot in #715
• Bump lodash-es from 4.17.15 to 4.17.21 by @dependabot in #713
• Bump export-to-csv from 1.2.1 to 1.2.2 by @dependabot in #717
• Bump moment from 2.29.4 to 2.30.0 by @dependabot in #719
• Bump moment from 2.30.0 to 2.30.1 by @dependabot in #720
• Bump export-to-csv from 1.2.2 to 1.3.0 by @dependabot in #735
• mongoose 5 migration by @stevenweaver in #760
• Merge by @stevenweaver in #762
• further webpack 5 migration by @stevenweaver in #761
• BUSTED-E by @stevenweaver in #757
• 1.12.0 : Refactor: Update Webpack, Fix Styling Issues, and Incorporate BUSTED-E by @stevenweaver in #763

Full Changelog: 1.11.5...1.12.0