Remove placeholder text and standardize file naming

DESCRIPTION

@@ -1,5 +1,5 @@
 Package: serodynamics
-Title: What the Package Does (One Line, Title Case)
+Title: Modeling Longitudinal Antibody Responses to Infection
 Version: 0.0.0.9047
 Authors@R: c(
     person("Peter", "Teunis", , "p.teunis@emory.edu", role = c("aut", "cph"),

NEWS.md

@@ -1,5 +1,11 @@
 # serodynamics (development version)
 
+* Repository polish:
+  - Fixed DESCRIPTION file title to remove placeholder text
+  - Corrected R-CMD-check badge URL (was pointing to wrong repository)
+  - Standardized file extensions: renamed `load_data.r` and `prep_data.r` to use uppercase `.R` extension for consistency
+  - Completed `load_data()` function documentation (replaced "to add" placeholder)
+
 * Added dev container configuration for persistent, cached development environment
   that includes R, JAGS, and all dependencies preinstalled, making Copilot
   Workspace sessions much faster.

R/load_data.r → R/load_data.R

@@ -1,5 +1,7 @@
 #' @title load and format data
-#' @description to add
+#' @description Load and format typhoid case data from a CSV file into a
+#' structured list for use with JAGS Bayesian modeling. The function processes
+#' longitudinal antibody measurements across multiple biomarkers and visits.
 #'
 #' @param datapath path to data folder
 #' @param datafile data file name

README.Rmd

@@ -18,7 +18,7 @@ knitr::opts_chunk$set(
 <!-- badges: start -->
 [![Codecov test coverage](https://codecov.io/gh/UCD-SERG/serodynamics/graph/badge.svg)](https://app.codecov.io/gh/UCD-SERG/serodynamics)
 [![CodeFactor](https://www.codefactor.io/repository/github/ucd-serg/serodynamics/badge)](https://www.codefactor.io/repository/github/ucd-serg/serodynamics)
-[![R-CMD-check](https://github.com/UCD-SERG/dcm/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/UCD-SERG/dcm/actions/workflows/R-CMD-check.yaml)
+[![R-CMD-check](https://github.com/UCD-SERG/serodynamics/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/UCD-SERG/serodynamics/actions/workflows/R-CMD-check.yaml)
 [![CRAN status](https://www.r-pkg.org/badges/version/serodynamics)](https://CRAN.R-project.org/package=serodynamics)
 [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
 <!-- badges: end -->

README.md

@@ -8,7 +8,7 @@
 [![Codecov test
 coverage](https://codecov.io/gh/UCD-SERG/serodynamics/graph/badge.svg)](https://app.codecov.io/gh/UCD-SERG/serodynamics)
 [![CodeFactor](https://www.codefactor.io/repository/github/ucd-serg/serodynamics/badge)](https://www.codefactor.io/repository/github/ucd-serg/serodynamics)
-[![R-CMD-check](https://github.com/UCD-SERG/dcm/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/UCD-SERG/dcm/actions/workflows/R-CMD-check.yaml)
+[![R-CMD-check](https://github.com/UCD-SERG/serodynamics/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/UCD-SERG/serodynamics/actions/workflows/R-CMD-check.yaml)
 [![CRAN
 status](https://www.r-pkg.org/badges/version/serodynamics)](https://CRAN.R-project.org/package=serodynamics)
 [![Lifecycle: