Repository containing pipelines developed for the SNAC-DB (Structural NANOBODY® VHH and Antibody Complex Database). SNAC-DB is ML-ready curation of the Protein Data Bank (PDB) for NANOBODY® VHH and antibody complex structures.
This repository contains the NbX models for the re-ranking of nanobody–antigen binding poses.
Official repository for the OUP published paper: "Computational Design of a Predicted High-Affinity Humanised Nanobody against KRAS Switch-I". Includes the PIA-KRASv2-Nb sequence, 3D models, and validation data.
Master thesis project, with aim to investigate tools that can potentially predict immunogenicity of therapeutic proteins. Further, the aim is to create a therapeutic profiler to predict immunogenicity of nanobodies, using the tools with best performance.
Streamlit platform for antibody and nanobody sequence analysis with AbNatiV, NbForge, NbFrame, and NanoMelt.
This repository contains codes for the regeneration of figures 3b and 3g in Tam, C., Kukimoto-Niino, M., Miyata-Yabuki, Y. et al. Targeting Ras-binding domain of ELMO1 by computational nanobody design. Commun Biol 6, 284 (2023).
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