The Rosetta Bio-macromolecule modeling package. Available through license with the University of Washington.

Code for the DISCO model: General Multimodal Protein Design Enables DNA-Encoding of Chemistry

Scripts for converting Rosetta enzyme design constraint files into regular Rosetta constraint files

The new and improved server combining Pedel, Mutanalyst and much more

De novo enzyme design of oxirane:NAD(P)H reductase enzyme

BioBrigit: Hybrid machine learning and knowledge-based approach for the prediction of metal diffusion pathways through proteins

Tools for enzyme engineers

This repo contains the data from: EVCouplings, DynaMut2, MDM-TASK, MD simulation. These files are important for understanding book chapter 17 "Computational Methods to Engineer Cas Proteins for Efficient Genome Editing"

De novo design of hydratase, aromatic edition

Code and raw data for my paper "Biocatalytic conversion of ethylene…"

Extract, structure, and apply visual design identity as machine-readable Design DNA across tokens, style, and effects