DNA methylation (DNAm) analysis using Illumina Methylation arrays (EPICv2, EPIC and 450K). It includes preprocessing, quality control, phenotype merging, and statistical modeling (GLM and LMM) for any phenotype using both minfi, ENmix and wateRmelon frameworks.
Differential methylation analysis pipeline using Illumina 450k array data from GEO (GSE42861). Includes preprocessing, QC, normalization, limma-based DMP detection, annotation, and visualization (volcano plot, MA plot, PCA). Built in R for reproducibility and educational use.
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