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1. TNBC_scRNAseq_GSE161529 TNBC_scRNAseq_GSE161529 Public

   End-to-end TNBC scRNA-seq (GSE161529): QC, integration, annotation, DE, enrichment, CNV (CopyKAT), + optional CellChat/trajectory

   R 1

2. Bioinformatics-Templates Bioinformatics-Templates Public

   Reusable R/Bash scripts for RNA-Seq (DESeq2), VCF filtering, and multi-omics visualization (heatmaps, volcano plots)

   HTML 1

3. Shotgun-GutFish-PRJNA1254096 Shotgun-GutFish-PRJNA1254096 Public

   Shotgun metagenomic analysis of fish gut microbiota from PRJNA1254096 using Kraken2, Bracken, and R.

   HTML

4. -WGCNA_DEGs_validation -WGCNA_DEGs_validation Public

   WGCNA analysis combined with DEG validation across datasets

   R 1

5. GBM-LUMIERE-Radiomics-Survival GBM-LUMIERE-Radiomics-Survival Public

   Radiomics-based survival modeling in glioblastoma using time-dependent Cox regression on longitudinal FLAIR MRI (LUMIERE dataset).

   R 1

6. TCGA-KIRC-Hallmark-Survival TCGA-KIRC-Hallmark-Survival Public

   Reproducible molecular risk modeling in TCGA-KIRC using Hallmark ssGSEA, LASSO Cox, survival validation, and calibration.

   R