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Initial tests
Initial tests
 
 
__pycache__
__pycache__
 
 
examples
examples
 
 
.gitignore
.gitignore
 
 
AHL_detection_by_sender.py
AHL_detection_by_sender.py
 
 
AHL_production_detection.py
AHL_production_detection.py
 
 
Arabinose_directional_chemotaxis.py
Arabinose_directional_chemotaxis.py
 
 
Arabinose_general_induction.py
Arabinose_general_induction.py
 
 
Bacteria_nutrient.py
Bacteria_nutrient.py
 
 
Bacterial_groups_competition.py
Bacterial_groups_competition.py
 
 
Effect_of_AHL_production_rate.py
Effect_of_AHL_production_rate.py
 
 
Group_cohesion_leader_follower.py
Group_cohesion_leader_follower.py
 
 
Inducer_response_curves.py
Inducer_response_curves.py
 
 
LICENSE
LICENSE
 
 
Leader_follower.py
Leader_follower.py
 
 
README.md
README.md
 
 
Swarming.py
Swarming.py
 
 
Two_bacterial_groups.py
Two_bacterial_groups.py
 
 
function_demo.py
function_demo.py
 
 
functionsDiffusion.py
functionsDiffusion.py
 
 
helper_functions.py
helper_functions.py
 
 
mainDiffusion.py
mainDiffusion.py
 
 
plate.py
plate.py
 
 
species.py
species.py
 
 

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colony-com

Diffusion model of a system where sender strains produce AHL in the presence of arabinose. AHL diffuses and activates GFP production in receiver strains. Orignal model inspired by Doong et. al. bioRxiv 2017: https://www.biorxiv.org/content/10.1101/220244v1

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Diffusion model of a system where sender strains produce AHL and has induced motility in the presence of arabinose. AHL diffuses and motility in receiver strains.

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synthetic-biology ecoli motility chemotaxis bacteriology quorum-sensing

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  • Python 100.0%