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Update kmer_counter to nf-core/cobiontid/kmercounter

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#222 In sanger-tol/ascc;

· DLBPointon opened on Mar 18, 2026

args and params in workflows

bugSomething isn't workingSomething isn't working

Status: Open.

#217 In sanger-tol/ascc;

· DLBPointon opened on Feb 2, 2026

Version 2 - Re-write to slim down the codebase

enhancementNew feature or requestNew feature or request

Status: Open.

#216 In sanger-tol/ascc;

· DLBPointon opened on Jan 30, 2026

Add K-mer decomposition and Tiara to merged BTK

enhancementNew feature or requestNew feature or request

Status: Open.

#214 In sanger-tol/ascc;

· prototaxites opened on Jan 30, 2026

param.read_type needs to be different

enhancementNew feature or requestNew feature or request

Status: Open.

#213 In sanger-tol/ascc;

· DLBPointon opened on Jan 29, 2026

Run search for organellar sequences in nuclear assembly only

enhancementNew feature or requestNew feature or request

Status: Open.

#208 In sanger-tol/ascc;

· jt8-sanger opened on Dec 12, 2025

Oncomplete stats

enhancementNew feature or requestNew feature or request

Status: Open.

#191 In sanger-tol/ascc;

· DLBPointon opened on Nov 17, 2025

Split fasta -> Blast -> merge

1.X.XReleases post V1Releases post V1

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#186 In sanger-tol/ascc;

· DLBPointon opened on Oct 22, 2025

Investigate BTK_Blobdir modifiers

enhancementNew feature or requestNew feature or request

Status: Open.

#174 In sanger-tol/ascc;

· DLBPointon opened on Sep 30, 2025

Adapt the FCSGX sub-workflow to utilise chunked-dbs

Status: Open.

#171 In sanger-tol/ascc;

· DLBPointon opened on Sep 30, 2025

Addition of SOURMASH subworkflow

enhancementNew feature or requestNew feature or request

Status: Open.

#170 In sanger-tol/ascc;

· DLBPointon opened on Sep 30, 2025

Add meta.yml for subworkflows

Status: Open.

#169 In sanger-tol/ascc;

· DLBPointon opened on Sep 30, 2025