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1. SushiLab/kTYPr SushiLab/kTYPr Public

   A command-line tool for predicting K-antigen type classifications in Escherichia coli.

   Python

2. protinseq protinseq Public

   A transposon sequencing protocol that selects insertions in-frame to expressed genes

   Python

3. CRG-CNAG/anubis CRG-CNAG/anubis Public

   Python package for the analysis of tn-seq data

   Jupyter Notebook 1 2

4. CRG-CNAG/fastqins CRG-CNAG/fastqins Public

   Pipeline for transposon sequencing processing

   Python 1

5. RanSEPs RanSEPs Public

   RanSEPs provides a framework for genome re-annotation and novel small proteins detection adjusting the search to different genomic features that govern protein-coding capabilities

   Python 6 2

6. genome_mining genome_mining Public

   Hands-on material to run different genome mining approaches in python.

   Jupyter Notebook 1 1