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Protocol plotly: RuntimeError: Expected embeddings in projected_reduced_embeddings_file to be of shape (3,), not (128,)

Status: Open.

#260 In sacdallago/bio_embeddings;

· ScraperMan2002 opened on Mar 13, 2026

Protocol plotly: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x89 in position 0: invalid start byte

Status: Open.

#258 In sacdallago/bio_embeddings;

· ScraperMan2002 opened on Mar 13, 2026

Protocol plotly: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x89 in position 0: invalid start byte

Status: Open.

#257 In sacdallago/bio_embeddings;

· ScraperMan2002 opened on Mar 12, 2026

Protocol umap: TypeError: check_array() got an unexpected keyword argument 'ensure_all_finite'

Status: Open.

#256 In sacdallago/bio_embeddings;

· ScraperMan2002 opened on Mar 12, 2026

Protocol tsne: AttributeError: 'list' object has no attribute 'shape'

Status: Open.

#255 In sacdallago/bio_embeddings;

· ScraperMan2002 opened on Mar 12, 2026

scikit-learn tSNE NumPy array issue.

Status: Open.

#254 In sacdallago/bio_embeddings;

· ScraperMan2002 opened on Mar 12, 2026

module 'distutils' has no attribute 'version' with solution

Status: Open.

#253 In sacdallago/bio_embeddings;

· ScraperMan2002 opened on Mar 11, 2026

tensorboard package error

Status: Open.

#252 In sacdallago/bio_embeddings;

· ScraperMan2002 opened on Mar 11, 2026

"transformers" package error.

Status: Open.

#251 In sacdallago/bio_embeddings;

· ScraperMan2002 opened on Mar 11, 2026

half_model is still present in some docs

Status: Open.

#250 In sacdallago/bio_embeddings;

· aaossa opened on Jun 6, 2025

bio_embeddings: Protocol prottrans_bert_bfd: BadZipFile: File is not a zip file

Status: Open.

#249 In sacdallago/bio_embeddings;

· creat-code-task opened on Apr 28, 2025

Protocol esm1b: HTTPError: HTTP Error 406: Not Acceptable

Status: Open.

#248 In sacdallago/bio_embeddings;

· ragunyrasta opened on Dec 30, 2024