cccolor

Usage: modelmaker cccolor -pdb <input pdb file> -density <input density file>
-res <resolution of density in Angstroms> ?options?
Options:
-threshold <ignore density below threshold value> (default: $DefaultThreshold)
-spacing <grid spacing of simulated map> (default: matches input map)
-sel <selection text to calculate correlations on> (default: all)
-mode <calculate correlations for secondary structure (ss) or individual residue (res)> (default: ss)
-ressel <selection text of resid range if performing per-resiude calculation (e.g., resid 1 to 20) > (default: all)
-bbonly <calculate per-residue correlation for backbone atoms only (options: on or off)> (default: off)