GitHub - quinlan-lab/CIDR_preprocessing

NIH CEPH CIDR Preprocessing

Pipelines for joint-genotyping the CIDR samples alongside the original 3-generation CEPH pedigrees.

Name		Name	Last commit message	Last commit date
Latest commit History 31 Commits
profiles/cluster		profiles/cluster
rules		rules
scripts		scripts
.gitignore		.gitignore
README.md		README.md
add_intervals_to_genomics_db.smk		add_intervals_to_genomics_db.smk
create_sample_cram_map.py		create_sample_cram_map.py
create_sample_gvcf_map.py		create_sample_gvcf_map.py
genotype_gvcfs_from_genomics_db.smk		genotype_gvcfs_from_genomics_db.smk
make_sample_list.py		make_sample_list.py
realign.smk		realign.smk