v4.6.0

What's Changed

• command line interface by @themattinthehatt in #81

Full Changelog: v4.5.1...v4.6.0

v4.5.1

What's Changed

• update docstrings by @themattinthehatt in #69
• Integration test ground truth by @themattinthehatt in #73
• Eks performance by @ksikka in #78
• Vectorize triangulation and Jacobian projection for nonlinear EKS by @LennyAharon in #79
• Vmap optimize_smooth_param over all keypoints — 1112s → 58s (19×) by @LennyAharon in #80

New Contributors

• @ksikka made their first contribution in #78
• @LennyAharon made their first contribution in #79

Full Changelog: 4.5.0...v4.5.1

v4.5.0

What's Changed

• update docs + linting by @themattinthehatt in #61
• use inverse of confidence for single network ens var by @themattinthehatt in #65
• batch triangulation call by @themattinthehatt in #66
• save 3d output for nonlinear EKS by @themattinthehatt in #64

Full Changelog: v4.4.1...4.5.0

v4.4.1

What's Changed

• fix python version by @themattinthehatt in #59

Full Changelog: v4.4.0...v4.4.1

v4.4.0

What's Changed

• modernize packaging and publishing by @themattinthehatt in #58

Full Changelog: v4.3.0...v4.4.0

v4.3.0

What's Changed

• Linear EKF Dynamax Backend Refactor by @keeminlee in #55
• fixed crop_frames for robustness by @keeminlee in #57
• Added Calibration Support, Nonlinear Smoothing Path, and Fly Dataset by @keeminlee in #56

Full Changelog: v4.2.0...v4.3.0

v4.2.0

What's Changed

• Multidim pca fix by @keeminlee in #48
• Multicam jax implementation -- partial backend unification by @keeminlee in #49
• add cli args to integration tests + cleanup by @themattinthehatt in #51
• Iblpupil jax backend by @keeminlee in #52
• Ibl paw jax backend + auto smoothing updates! by @keeminlee in #53
• Removed old functions, as well as R (observation noise cov matrix), a redundant param calculated from ensemble variance per timestep by @keeminlee in #54

Full Changelog: v4.1.0...v4.2.0

v4.1.0

What's Changed

• generalize format_data by @themattinthehatt in #30
• Added Mahalanobis distance thresholding by @keeminlee in #31
• handle var inflation for 2 view case by @themattinthehatt in #32
• typechecking by @themattinthehatt in #33
• restrict FA fitting in maha distance to low variance observations by @themattinthehatt in #35
• fixed singular matrix issue in compute_mahalanobis() by @keeminlee in #37
• expose more user options for variance inflation by @themattinthehatt in #38
• allow user to pass maha params for multiview variance inflation by @themattinthehatt in #39
• MarkerArrays implemented for Multiview (general and mirrored cases) by @keeminlee in #41
• Singlecam marker array by @keeminlee in #42
• pca_matrix optional arg + singlecam variance filtering by @keeminlee in #43
• Nan edge case fix + pytest by @keeminlee in #45
• quantile variable filter frame length fix by @keeminlee in #46

Full Changelog: v4.0.0...v4.1.0

v4.0.0

What's Changed

• Mirrored and Un-mirrored multicam API improvements by @keeminlee in #24
• gpu acceleration removed by @keeminlee in #26
• Fixed output formats to match singlecam by @keeminlee in #27
• remove unused functions by @themattinthehatt in #28

Full Changelog: v3.0.0...v4.0.0

v3.0.0

What's Changed

• integration tests for scripts by @themattinthehatt in #13
• set up CI with github runners by @themattinthehatt in #14
• cleanup singleview and pupil eks scripts/functions by @themattinthehatt in #16
• add separated mirror-mouse data by @themattinthehatt in #19
• update README by @themattinthehatt in #20
• IBL pupil cleanup by @themattinthehatt in #21
• singleview EKS cleanup by @themattinthehatt in #22
• v3.0.0 by @themattinthehatt in #23

Full Changelog: v2.1.1...v3.0.0