Repositories list

• java-common-libs

  Public
  OpenCB common libs project. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic/

  Java

  •

  Apache License 2.0

  •2828 forks•44 stars•66 issues•66 pull requests•Updated Apr 23, 2026Apr 23, 2026

• opencga

  Public
  An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company Zetta Genomics. Found a…

  Java

  •

  Apache License 2.0

  •104104 forks•179179 stars•444444 issues•1313 pull requests•Updated Apr 2, 2026Apr 2, 2026

• jsorolla

  Public
  JSorolla is a JavaScript Library for biological and genomic data visualization. Found a bug or have an idea for a new feature? Let us know at https://zettagenom…

  JavaScript

  •

  Apache License 2.0

  •3030 forks•4242 stars•100100 issues•33 pull requests•Updated Mar 12, 2026Mar 12, 2026

• cellbase

  Public
  High-Performance NoSQL database and RESTful web services to access to most relevant biological data. Found a bug or have an idea for a new feature? Let us know …

  Java

  •

  Apache License 2.0

  •5353 forks•9494 stars•144144 issues•2222 pull requests•Updated Mar 12, 2026Mar 12, 2026

• biodata

  Public
  Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics. Found a bug or have an idea for a…

  Java

  •

  Apache License 2.0

  •3636 forks•3131 stars•4444 issues•77 pull requests•Updated Mar 5, 2026Mar 5, 2026

• ci-core

  Public archive
  Core CI/CD components for OpenCB and Xetabase projects. Centralized reusable GitHub Actions, composite actions, and internal workflows implementing our organi…

  22 forks•00 stars•00 issues•00 pull requests•Updated Jan 16, 2026Jan 16, 2026

• argus

  Public archive
  A Python engine for testing and benchmarking REST web services. Found a bug or have an idea for a new feature? Let us know at https://zettagenomics.com/academic…

  Python

  •

  Apache License 2.0

  •33 forks•00 stars•00 issues•00 pull requests•Updated Nov 20, 2024Nov 20, 2024

• oskar

  Public archive
  Oskar implements an analysis suite for working with genomic variation data. Some big data technologies such as Spark are used to provide big data analytics

  Java

  •

  Apache License 2.0

  •22 forks•55 stars•1313 issues•33 pull requests•Updated May 16, 2023May 16, 2023

• bionetdb

  Public archive
  BioNetDB implements a storage engine to work with biological networks using a NoQSL Graph database

  JavaScript

  •

  Apache License 2.0

  •88 forks•77 stars•55 issues•33 pull requests•Updated Nov 15, 2022Nov 15, 2022

• iva

  Public archive
  Generic Interactive Variant Analysis browser

  JavaScript

  •

  Apache License 2.0

  •1919 forks•2929 stars•2020 issues•77 pull requests•Updated Apr 12, 2022Apr 12, 2022

• opencb.io

  Public archive
  22 forks•00 stars•00 issues•00 pull requests•Updated Sep 15, 2020Sep 15, 2020

• genome-maps

  Public archive
  An open-source high-performance web-based HTML5 genome browser. Genome Maps can be customized and allow browsing user data such as BAM and VCF files among other…

  HTML

  •

  GNU General Public License v2.0

  •1111 forks•3838 stars•2222 issues•11 pull request•Updated Sep 27, 2018Sep 27, 2018

• hpg-bigdata

  Public archive
  This repository implements converters and tools for working with NGS data in HPC or Hadoop cluster

  Java

  •

  Apache License 2.0

  •1515 forks•1717 stars•2323 issues•11 pull request•Updated Apr 13, 2018Apr 13, 2018

• hpg-aligner

  Public archive
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment

  C

  •

  GNU General Public License v2.0

  •1313 forks•3434 stars•99 issues•11 pull request•Updated Jul 7, 2017Jul 7, 2017

• hpg-libs

  Public archive
  C libs for HPG project

  C

  •

  GNU General Public License v2.0

  •88 forks•44 stars•55 issues•11 pull request•Updated Jul 7, 2017Jul 7, 2017

• hpg-pore

  Public archive
  Nanopore desc

  Java

  •

  Apache License 2.0

  •33 forks•1818 stars•33 issues•00 pull requests•Updated Aug 22, 2016Aug 22, 2016

• ga4gh

  Public archive
  This repository implements the Protobuf and Avro schemas from GA4GH available at http://ga4gh.org/#/schemas

  Java

  •

  Apache License 2.0

  •77 forks•66 stars•00 issues•00 pull requests•Updated Jul 25, 2016Jul 25, 2016

• hpg-variant

  Public archive
  A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics

  C

  •

  GNU General Public License v2.0

  •1818 forks•1414 stars•88 issues•00 pull requests•Updated Feb 12, 2016Feb 12, 2016

• cell-maps

  Public archive
  An open-source web-based HTML5 systems biology tool for visualizing and analysing biological networks

  HTML

  •

  GNU General Public License v2.0

  •99 forks•99 stars•55 issues•00 pull requests•Updated Feb 4, 2016Feb 4, 2016

• datastore

  Public archive
  Datastore library for querying RDBMS and NoSQL databases

  Java

  •

  Apache License 2.0

  •99 forks•11 star•44 issues•00 pull requests•Updated Jan 22, 2016Jan 22, 2016

• easyngs

  Public archive
  EasyNGS provide a rich and interactive web application for NGS data processing

  HTML

  •

  Apache License 2.0

  •33 forks•44 stars•11 issue•00 pull requests•Updated Oct 28, 2015Oct 28, 2015

• variant

  Public archive
  Variant is an ambitious project aimed to provide a complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic s…

  JavaScript

  •66 forks•22 stars•11 issue•00 pull requests•Updated Feb 6, 2015Feb 6, 2015

• opencb.github.io

  Public archive
  CSS

  •22 forks•11 star•00 issues•00 pull requests•Updated Aug 7, 2014Aug 7, 2014