Repositories list

• hopsy

  Public
  hopsy - Highly Optimized Polytope Sampling in Python

  C++

  •

  MIT License

  •22 forks•1717 stars•00 issues•00 pull requests•Updated Apr 14, 2026Apr 14, 2026

• hops

  Public
  Highly Optimized Polytope Sampling

  C++

  •

  MIT License

  •00 forks•1313 stars•00 issues•00 pull requests•Updated Mar 10, 2026Mar 10, 2026

• hopsy-staged-recipe

  Public
  A place to submit conda recipes before they become fully fledged conda-forge feedstocks

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5.9k5.9k forks•00 stars•00 issues•00 pull requests•Updated Mar 3, 2026Mar 3, 2026

• CellSium

  Public
  CellSium – Cell Simulator for microfluidic microcolonies

  Python

  •

  BSD 2-Clause "Simplified" License

  •33 forks•33 stars•00 issues•11 pull request•Updated Sep 4, 2025Sep 4, 2025

• FluxML

  Public
  A Universal Modeling Language for Metabolic Flux Analysis

  modeling-languagespecification-languagemetabolic-models+ 4

  modeling-languagespecification-languagemetabolic-modelsmetabolic-networkmetabolic-engineeringmetabolic-flux-analysis13c-mfa

  C++

  •

  MIT License

  •66 forks•1212 stars•1414 issues•00 pull requests•Updated Mar 6, 2025Mar 6, 2025

• DNest4

  Public
  Diffusive Nested Sampling

  C++

  •

  MIT License

  •2323 forks•00 stars•00 issues•00 pull requests•Updated Sep 9, 2024Sep 9, 2024

• margss

  Public
  Sampling Genome-scale models as a service

  JavaScript

  •00 forks•00 stars•11 issue•2121 pull requests•Updated Jan 9, 2024Jan 9, 2024

• bug_report_example

  Public
  Template for reporting bugs including code and data

  Python

  •22 forks•00 stars•00 issues•11 pull request•Updated Aug 11, 2023Aug 11, 2023

• uNAC-staged-recipes

  Public
  A place to submit conda recipes before they become fully fledged conda-forge feedstocks

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •5.9k5.9k forks•00 stars•00 issues•00 pull requests•Updated Jun 23, 2023Jun 23, 2023

• junn

  Public
  WIP: JUNN – Jülich U-Net Neural Network

  Python

  •

  BSD 2-Clause "Simplified" License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 30, 2021Jun 30, 2021

• SurEmCo

  Public
  Superresolution Emitter Counter Analysis Software

  C++

  •

  BSD 2-Clause "Simplified" License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 28, 2021Apr 28, 2021

• 1315N_abundance_correction

  Public
  redirect to the correct page

  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 18, 2021Mar 18, 2021

• mycelyso

  Public
  MYCEelium anaLYsis SOftware

  pythonbioinformaticsimage-analysis+ 2

  pythonbioinformaticsimage-analysismicrofluidicsmycelium

  Python

  •

  BSD 2-Clause "Simplified" License

  •33 forks•22 stars•11 issue•00 pull requests•Updated Mar 6, 2021Mar 6, 2021

• molyso

  Public
  molyso - Mother Machine Analysis Software

  pythonbioinformaticsimage-analysis+ 2

  pythonbioinformaticsimage-analysismicrofluidicsmother-machine

  Python

  •

  BSD 2-Clause "Simplified" License

  •33 forks•1010 stars•33 issues•00 pull requests•Updated Mar 6, 2021Mar 6, 2021

• pilyso-io-omero

  Public
  Python Image anaLYsis SOftware library - Input / Output - OMERO plugin

  Python

  •

  GNU General Public License v2.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 5, 2021Mar 5, 2021

• pilyso-io

  Public
  Python Image anaLYsis SOftware library - Input / Output

  Python

  •

  BSD 2-Clause "Simplified" License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 5, 2021Mar 5, 2021

• mycelyso-inspector

  Public
  MYCEelium anaLYsis SOftware - Inspector

  Python

  •

  BSD 2-Clause "Simplified" License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 17, 2021Feb 17, 2021

• OCDES

  Public
  OCDE Simulator

  MATLAB

  •

  GNU General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 14, 2020Jul 14, 2020

• 13C15N_abundance_correction

  Public
  Correction method as described in https://doi.org/10.1021/acs.analchem.9b01788

  Python

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 18, 2019Oct 18, 2019

• himics

  Public
  HiMiCs – High Throughput Microfluidic Single Cell Analysis

  00 forks•00 stars•00 issues•00 pull requests•Updated Nov 14, 2018Nov 14, 2018

• MooViE

  Public
  Multi-objective optimization Visualization Engine

  00 forks•11 star•00 issues•00 pull requests•Updated Sep 15, 2017Sep 15, 2017

• KriKit

  Public archive
  MATLAB

  •

  GNU General Public License v3.0

  •22 forks•88 stars•00 issues•00 pull requests•Updated May 2, 2017May 2, 2017

• jungle-calibration

  Public
  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 22, 2017Apr 22, 2017

• jungle-ij1-macros

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 22, 2017Apr 22, 2017

• jungle-docs

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 22, 2017Apr 22, 2017

• jungle

  Public
  A set of ImageJ plugins/macros for analysing time-lapse image sequences of microbial population development in microfluidic lab-on-a-chip devices.

  Java

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 22, 2017Apr 22, 2017

• OverfittingExample

  Public
  A small matlab example demonstrating how complex models lead to overfitting.

  MATLAB

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 12, 2017Apr 12, 2017

• KriKit_MOGO_ChromatographyCaseStudies

  Public archive
  MATLAB

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 14, 2017Mar 14, 2017

• redicon-dune-immo

  Public archive
  Makefile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 13, 2016Apr 13, 2016

• redicon-tools

  Public archive
  Tools for running and analysing Brownian dynamics simulations with BD_BOX

  Shell

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 14, 2015Dec 14, 2015