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    10 repositories

    • fibertools-rs

      Public
      Tools for fiberseq data written in rust.
      Rust
      •9•67•7•2•Updated May 1, 2026May 1, 2026

    • The-Guide-for-DAF-seq

      Public
      The guide to DAF-seq: wet lab protocols and computational best practices
      2•3•0•0•Updated Apr 28, 2026Apr 28, 2026

    • FiberHMM

      Public
      HMM-based footprint caller for single molecule footprinting data
      Python
      •
      MIT License
      •2•5•2•0•Updated Apr 24, 2026Apr 24, 2026

    • fiberseq.github.io

      Public
      Source for "The computational guide to Fiber-seq"
      Python
      •3•6•0•0•Updated Apr 22, 2026Apr 22, 2026

    • fiberseq-qc

      Public
      QC plots and statistics
      Shell
      •
      GNU General Public License v3.0
      •2•10•1•0•Updated Apr 1, 2026Apr 1, 2026

    • FIRE

      Public
      A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
      Python
      •
      MIT License
      •6•29•7•1•Updated Apr 1, 2026Apr 1, 2026

    • Molecular-annotation-spec

      Public
      Rust
      •
      MIT License
      •1•3•2•0•Updated Mar 19, 2026Mar 19, 2026

    • .github

      Public
      0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • train-m6A-calling

      Public
      ML methods for m6A-calling
      Jupyter Notebook
      •
      MIT License
      •1•5•0•1•Updated Apr 18, 2024Apr 18, 2024

    • fiberseq-smk

      Public archive
      Snakemake pipeline for processing fiberseq data
      Python
      •
      MIT License
      •0•3•0•0•Updated Jan 11, 2024Jan 11, 2024
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