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    23 repositories

    • metatlas

      Public
      Metabolite Atlas Main Repository
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•16•6•9•Updated May 1, 2026May 1, 2026

    • envnet

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Mar 13, 2026Mar 13, 2026

    • infrastructure_automation

      Public
      Shell
      •0•0•0•0•Updated Feb 25, 2026Feb 25, 2026

    • growth_rate

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Feb 12, 2026Feb 12, 2026

    • metatlas-data

      Public
      Data files for metabolite atlas generation
      Jupyter Notebook
      •0•0•0•0•Updated Dec 11, 2025Dec 11, 2025

    • envnet_gnps2

      Public
      Python
      •0•0•0•0•Updated Dec 3, 2025Dec 3, 2025

    • magi

      Public
      Quickly find and score consensus between metabolite identifications and gene annotations
      Python
      •
      Other
      •2•18•20•0•Updated Nov 10, 2025Nov 10, 2025

    • labkey_deploy

      Public
      Instructions and Docker setup for running our LIMS
      Shell
      •
      Other
      •3•0•0•0•Updated Sep 30, 2025Sep 30, 2025

    • chemecho

      Public
      Embedding and featurization of metabolite structures and spectra
      Jupyter Notebook
      •
      Other
      •0•6•0•0•Updated Aug 22, 2025Aug 22, 2025

    • omaat

      Public
      Jupyter Notebook
      •
      Other
      •2•5•2•1•Updated Feb 20, 2025Feb 20, 2025

    • data_synthesis

      Public
      A share point for data synthesis and integration to facilitate staged analysis
      Jupyter Notebook
      •0•0•0•0•Updated Feb 7, 2025Feb 7, 2025

    • blink

      Public
      Jupyter Notebook
      •
      Other
      •6•12•0•0•Updated Jan 16, 2025Jan 16, 2025

    • ms-sentry

      Public
      Python
      •0•2•1•0•Updated May 30, 2024May 30, 2024

    • metatlas_prefilter

      Public
      Python
      •0•0•0•0•Updated Apr 29, 2024Apr 29, 2024

    • 2023_Drop-NIMS

      Public
      A combinatorial droplet microfluidic device integrated with mass spectrometry for enzyme screening - Data repository
      1•1•0•0•Updated May 8, 2023May 8, 2023

    • BASTet

      Public
      Berkeley Analysis and Storage Toolkit (BASTet)
      Jupyter Notebook
      •
      Other
      •1•9•1•0•Updated Apr 18, 2023Apr 18, 2023

    • simile

      Public
      Jupyter Notebook
      •
      Other
      •2•16•2•0•Updated Jul 20, 2022Jul 20, 2022

    • md2st

      Public
      metabolite databases to standardized tautomers
      Jupyter Notebook
      •1•0•0•0•Updated May 12, 2020May 12, 2020

    • nersc_python_install

      Public
      Shell
      •0•0•1•0•Updated Jul 31, 2019Jul 31, 2019

    • pactolus

      Public
      Pactolus
      Jupyter Notebook
      •
      Other
      •1•3•1•0•Updated Jul 19, 2019Jul 19, 2019

    • bmc_bioinf_2016_erbilgin

      Public
      Data and code to accompany manuscript
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated May 10, 2017May 10, 2017

    • ms-monitor

      Public
      Python
      •0•0•0•0•Updated Jun 21, 2016Jun 21, 2016

    • transform

      Public
      A service that provides import, upload, and download capabilities as well as tools for validating and converting between data types, both internal and external …
      Python
      •
      MIT License
      •27•0•0•0•Updated May 19, 2015May 19, 2015
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