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    28 repositories

    • lncRNARN

      Public
      Script, code and data for analyses in the paper "Quantitative estimates of the regulatory influence of long non-coding RNAs on global gene expression variation …
      R
      •0•1•0•0•Updated Jan 29, 2024Jan 29, 2024

    • VarSAn

      Public
      R
      •1•2•0•0•Updated Oct 10, 2023Oct 10, 2023

    • GEMSTAT

      Public
      Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression
      C++
      •8•6•27•0•Updated Jun 8, 2022Jun 8, 2022

    • Stubb

      Public
      0•0•0•0•Updated Dec 23, 2021Dec 23, 2021

    • phyme

      Public
      0•0•0•0•Updated Dec 23, 2021Dec 23, 2021

    • cisMetalysis

      Public
      0•0•0•0•Updated Dec 23, 2021Dec 23, 2021

    • crmfinding

      Public
      0•0•0•0•Updated Dec 23, 2021Dec 23, 2021

    • d2z

      Public
      0•0•0•0•Updated Dec 23, 2021Dec 23, 2021

    • dips

      Public
      0•0•0•0•Updated Dec 23, 2021Dec 23, 2021

    • EvolSimul

      Public
      0•0•0•0•Updated Dec 23, 2021Dec 23, 2021

    • gemstat-gl

      Public
      HTML
      •0•0•0•0•Updated Dec 23, 2021Dec 23, 2021

    • indelign

      Public
      0•0•0•0•Updated Dec 23, 2021Dec 23, 2021

    • SCRMshaw

      Public
      0•0•0•0•Updated Dec 23, 2021Dec 23, 2021

    • stemma

      Public
      0•0•0•0•Updated Dec 22, 2021Dec 22, 2021

    • swan

      Public
      0•0•0•0•Updated Dec 22, 2021Dec 22, 2021

    • GEMSTAT_scripts

      Public
      Various task-agnostic scripting language tools for dealing with GEMSTAT.
      Python
      •1•0•1•0•Updated Oct 15, 2021Oct 15, 2021

    • GEMSTAT_refinement_sampler

      Public
      A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.
      Shell
      •1•1•8•0•Updated May 22, 2020May 22, 2020

    • SERGIO

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 24, 2019Oct 24, 2019

    • Enhancer-Activity-Predictor

      Public
      R
      •0•1•0•0•Updated Sep 26, 2019Sep 26, 2019

    • MOP

      Public
      C++
      •0•0•0•0•Updated May 1, 2019May 1, 2019

    • Lab-Docker

      Public
      Docker Containers used in the lab
      Dockerfile
      •1•0•0•0•Updated Oct 17, 2018Oct 17, 2018

    • autotools-unittest

      Public
      The autotools-unittest is a minimal starter kit when writing C++ library with autotools, google test and google mock.
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •5•0•0•0•Updated May 25, 2018May 25, 2018

    • SNOT_lang

      Public
      Simple Numerical Object Transcription (SNOT) is a language similar to JSON meant for numerical computing.
      C++
      •
      MIT License
      •1•0•0•0•Updated Nov 15, 2017Nov 15, 2017

    • ASTER

      Public
      Analysis of SNPs Targeting Evolutionary Rates
      0•0•0•0•Updated Jul 12, 2017Jul 12, 2017

    • STAP

      Public
      A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data. http://www.ncbi.nlm.nih.gov/pub…
      C++
      •0•1•0•0•Updated Apr 9, 2015Apr 9, 2015

    • CPPExperiments

      Public
      A cannonical place to store C++ example code / experiments that will allow us to pin down certain behaviours. Then we can approach our other projects with confi…
      C++
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Apr 2, 2015Apr 2, 2015

    • linuxbrew

      Public
      A fork of Homebrew for Linux
      Ruby
      •
      Other
      •293•0•0•0•Updated Jan 23, 2015Jan 23, 2015

    • SinhaLab_Infrastructure

      Public
      Workaround because we have an ancient Linux distribution
      Shell
      •0•0•0•0•Updated Jan 22, 2015Jan 22, 2015
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