Repositories list

• ldsc

  Public
  Fix for FH error

  Python

  •

  GNU General Public License v3.0

  •88 forks•00 stars•00 issues•00 pull requests•Updated Apr 29, 2026Apr 29, 2026

• sc-blipper

  Public
  A Nextflow pipline for running single cell post processing

  enrichmentnextflowcnmf

  enrichmentnextflowcnmf

  Nextflow

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 24, 2026Apr 24, 2026

• Perez_Alcantara_pooled_iMGL

  Public
  Code for Perez-Alcantara et al., 2025

  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• poodleR

  Public
  POOled donor Deconvolution by LEast square Regression

  R

  •

  GNU General Public License v3.0

  •00 forks•00 stars•55 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• CellDivider

  Public
  Main repository for the CellDivider project

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 24, 2026Mar 24, 2026

• .github

  Public
  Main repo for storing public facing README for the TrynkaLab organization

  00 forks•00 stars•00 issues•00 pull requests•Updated Mar 13, 2026Mar 13, 2026

• tglow-manuscript

  Public
  Scripts supporting the first tglow manuscript

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 19, 2026Feb 19, 2026

• tglow-r

  Public
  R package for high content image analysis

  rhciimage-analysis+ 2

  rhciimage-analysishigh-content-imagingtglow

  R

  •00 forks•00 stars•11 issue•00 pull requests•Updated Feb 12, 2026Feb 12, 2026

• tglow-pipeline

  Public
  Nextflow pipeline for processing high content imaging data

  nextflowimage-processinghci+ 1

  nextflowimage-processinghcitglow

  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 12, 2026Feb 12, 2026

• CellDivider_mlp

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 4, 2026Feb 4, 2026

• tglow-core

  Public
  Python package supporting tglow-pipeline

  pythonimage-processingtglow

  pythonimage-processingtglow

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 28, 2026Jan 28, 2026

• tglow-dino4cells

  Public
  Adaptation of DINO4Cells to produce embeddings per channel

  pythondeep-learninghci+ 2

  pythondeep-learninghciimage-analysistglow

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 27, 2026Jan 27, 2026

• clij2-fft

  Public
  Fork of CLIJ2-fft to fix issues and work with the sanger farm-22 compute

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •99 forks•00 stars•00 issues•00 pull requests•Updated Jan 24, 2026Jan 24, 2026

• VIDRA

  Public
  Code relevant to the VIDRA manuscript

  Python

  •33 forks•00 stars•00 issues•00 pull requests•Updated Aug 5, 2025Aug 5, 2025

• ProliferationAnalysis

  Public
  Proliferation modeling of cell division dyes in R

  rproliferation

  rproliferation

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 30, 2024Oct 30, 2024

• washer_et_al_microglia_media

  Public
  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Dec 12, 2022Dec 12, 2022

• CHEERS

  Public
  Python

  •44 forks•88 stars•55 issues•00 pull requests•Updated May 25, 2022May 25, 2022

• Treg_Multiomics

  Public
  R

  •11 fork•33 stars•00 issues•00 pull requests•Updated Mar 7, 2022Mar 7, 2022

• T-cell-costimulation

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 9, 2021Jun 9, 2021