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@MetabioinfomicsLab Metabioinfomics Lab (Università degli Studi di Padova)

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    15 repositories

    • SNVs_paper

      Public
      Analysis of SNVs trajectories over time
      metagenomicssnv
      metagenomicssnv
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 18, 2026Apr 18, 2026

    • miFRED

      Public
      Microbial functional redundancy calculator from metagenomics data: community-level functional redundancy (FREDc) and redundancy of 86 metabolic and ecological p…
      machine-learningmetagenomicsfunctional-redundancy
      machine-learningmetagenomicsfunctional-redundancy
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Apr 2, 2026Apr 2, 2026

    • KEMET

      Public
      KEGG Module Evaluation Tool
      Python
      •
      Other
      •7•0•0•0•Updated Mar 17, 2026Mar 17, 2026

    • MICROPHERRET

      Public
      MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using machine lEarning Techniques
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•12•1•0•Updated Dec 16, 2025Dec 16, 2025

    • Sanguineti_2025_code

      Public
      Data and codes of "Modelling microbial and metabolic shifts in trickle bed reactor biomethanation at decreasing gas retention times", Sanguineti et al , 2025
      Python
      •0•0•1•0•Updated Aug 22, 2025Aug 22, 2025

    • CICERON

      Public
      Classification bIoaCtive pEptides fRom micrObial fermeNtation
      Jupyter Notebook
      •0•4•2•0•Updated Jul 7, 2025Jul 7, 2025

    • ssfw-paper

      Public
      Script used to generate models and figures for `Sustainable Food Waste Management in Anaerobic Digesters: Prediction of the Organic Load Impact by Metagenome-Sc…
      Jupyter Notebook
      •0•0•0•0•Updated Jul 4, 2025Jul 4, 2025

    • syntrophyAA

      Public
      Set of script used to generate figures for `Exploring metabolic interactions in methanogenic microbiota: the role of amino acids in carbon fixation`
      Jupyter Notebook
      •0•0•0•0•Updated Jun 4, 2025Jun 4, 2025

    • 16S_pipe_metabioinfomics

      Public
      Pipeline for the analysis of 16S rRNA data
      Python
      •0•0•1•0•Updated May 29, 2025May 29, 2025

    • panDraft

      Public
      pan-Draft: automated reconstruction of species-representative metabolic models from multiple genomes
      0•0•0•0•Updated May 19, 2025May 19, 2025

    • .github

      Public
      Organization description (View as: Public)
      0•0•0•0•Updated May 7, 2025May 7, 2025

    • metapresence

      Public
      Metapresence is a Python tool to calculate metrics to assess the evenness of the coverage distribution on DNA sequences, in order to infer their presence in a g…
      Python
      •2•8•1•0•Updated Feb 18, 2025Feb 18, 2025

    • feeds

      Public
      Food wastE biopEptiDe claSsifier: from microbial genome to biopeptides function
      databasepython-scriptcleavage-sites
      databasepython-scriptcleavage-sitesproteasebacterial-genome-analysisbioactive-peptidesbiopeptidesyeast-protein-analysispeptidase
      Python
      •
      GNU General Public License v3.0
      •0•2•1•0•Updated Nov 14, 2024Nov 14, 2024

    • syntrophy

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Sep 26, 2024Sep 26, 2024

    • coco_paper

      Public
      Metatranscriptomics-guided genome-scale metabolic modelling of microbial communities
      Jupyter Notebook
      •
      MIT License
      •0•2•2•0•Updated Dec 6, 2022Dec 6, 2022
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