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@LyonsLab Lyons Lab @ University of Arizona

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    19 repositories

    • Yerba

      Public
      CoGe's Yerba is a distributed job management framework.
      Python
      •
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Feb 2, 2022Feb 2, 2022

    • coge

      Public
      CoGe (Comparative Genomics) Platform
      pythonbioinformaticsrna-seq
      pythonbioinformaticsrna-seqgenomicsperlcomparative-genomicscogesyntenygenomics-visualization
      Perl
      •
      BSD 2-Clause "Simplified" License
      •22•46•4•1•Updated Dec 21, 2021Dec 21, 2021

    • PhytoOracle

      Public
      Distributive pipelines for phenomic data analysis
      Python
      •
      MIT License
      •26•13•2•0•Updated Nov 12, 2021Nov 12, 2021

    • StarBLAST

      Public
      StarBLAST allows BLAST scalability by distributing jobs across computer systems.
      educationgeneticsdistributed-computing
      educationgeneticsdistributed-computingblast
      Ruby
      •
      Other
      •9•2•0•0•Updated Jun 2, 2021Jun 2, 2021

    • Biosphere_Class

      Public
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated Aug 19, 2020Aug 19, 2020

    • CoGe_plugin

      Public
      JBrowse plugin for GenomeView in CoGe, also known as EPIC_CoGe
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Mar 25, 2020Mar 25, 2020

    • cogeshell

      Public
      command line utility for accessing the CoGe API
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•0•0•0•Updated Nov 7, 2017Nov 7, 2017

    • swagger-ui

      Public
      Swagger UI is a dependency-free collection of HTML, Javascript, and CSS assets that dynamically generate beautiful documentation from a Swagger-compliant API.
      JavaScript
      •
      Other
      •9.3k•0•0•0•Updated Dec 6, 2016Dec 6, 2016

    • Teabag

      Public
      CoGe's Utility Belt
      Shell
      •1•0•0•0•Updated Jun 3, 2016Jun 3, 2016

    • Greentea

      Public
      Greentea is CoGe's Usage Metrics frontend service
      CSS
      •1•1•0•0•Updated Apr 19, 2016Apr 19, 2016

    • Blacktea

      Public
      CoGe D3 Analytics and Data Viz
      Python
      •0•0•0•0•Updated Mar 9, 2016Mar 9, 2016

    • JadeOolong

      Public
      Virtual Reality
      HTML
      •0•1•0•0•Updated Oct 13, 2015Oct 13, 2015

    • jdot

      Public
      A fully interactive HTML5 canvas-based dotplot/scatterplot viewer.
      JavaScript
      •
      MIT License
      •1•1•1•0•Updated May 28, 2015May 28, 2015

    • coge-vagrant

      Public
      A distributed development environment for the CoGe Platform.
      Shell
      •
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Dec 16, 2014Dec 16, 2014

    • Bismark-postprocessing

      Public
      Perl scripts for the post-processing of Bismark bisulfite data
      Perl
      •0•0•0•0•Updated Oct 9, 2014Oct 9, 2014

    • cctools

      Public
      The Cooperative Computing Tools (cctools) enable large scale distributed computations to harness hundreds to thousands of machines from clusters, clouds, and gr…
      C
      •
      Other
      •125•0•0•0•Updated Aug 13, 2014Aug 13, 2014

    • bioplot

      Public
      Bioinformatic plots
      JavaScript
      •
      MIT License
      •0•1•0•0•Updated Jul 12, 2014Jul 12, 2014

    • AGRP

      Public
      Java
      •1•0•0•0•Updated May 7, 2014May 7, 2014

    • blast-matrix

      Public
      Blast matrix used in the CoGe Blast tool
      Other
      •0•0•0•0•Updated Sep 6, 2013Sep 6, 2013
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