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@GerkeLab Gerke Lab

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    34 repositories

    • gerkelab-com

      Public
      Website source for gerkelab.com
      HTML
      •3•0•15•4•Updated Mar 27, 2024Mar 27, 2024

    • TCGAhrd

      Public
      Homologous recombination deficiency in TCGA PanCancer Atlas
      HTML
      •
      MIT License
      •4•30•0•0•Updated Dec 31, 2020Dec 31, 2020

    • mediator

      Public
      Causal mediation analysis in R
      R
      •
      Other
      •6•31•7•0•Updated Dec 12, 2020Dec 12, 2020

    • fcds

      Public
      Process data from the Florida Cancer Data System
      R
      •
      Other
      •1•3•17•0•Updated Jul 30, 2020Jul 30, 2020

    • core-r-course

      Public
      HTML
      •1•1•0•0•Updated Jun 11, 2020Jun 11, 2020

    • betterposter

      Public
      👩‍🔬👨‍🔬 Another R Markdown Better Scientific Poster
      posterrmarkdownpagedown
      posterrmarkdownpagedownscientific-posterpagedjs
      HTML
      •
      Other
      •11•112•1•0•Updated Jun 11, 2020Jun 11, 2020

    • ThyroidRAS

      Public
      Data and code for examining gene expression differences in RAS thyroid tumors
      R
      •0•1•0•0•Updated May 7, 2020May 7, 2020

    • prostate-risk-classification

      Public
      comparing risk stratification tools for prostate cancer
      R
      •0•2•0•0•Updated Apr 29, 2020Apr 29, 2020

    • TCGAancestry

      Public
      Admixture estimates for the TCGA panCancer cohort
      0•6•2•0•Updated Mar 17, 2020Mar 17, 2020

    • grkmisc

      Public
      A package of miscellaneously helpful functions.
      R
      •
      Other
      •2•10•1•0•Updated Feb 18, 2020Feb 18, 2020

    • hexLogoGerke

      Public
      Hex logo/sticker for Gerke Lab
      R
      •0•2•0•0•Updated Jan 14, 2020Jan 14, 2020

    • shinyDAG

      Public
      a Shiny app to create/visualize/analyze causal diagrams (DAGs)
      R
      •
      MIT License
      •18•67•4•0•Updated Dec 5, 2019Dec 5, 2019

    • prostatePrognosticPanels

      Public
      R
      •0•3•1•0•Updated Sep 11, 2019Sep 11, 2019

    • gformula

      Public
      g-formula
      SAS
      •0•1•0•0•Updated Aug 13, 2019Aug 13, 2019

    • epiTAD

      Public
      Visualize Hi-C data alongside annotation relevant to genetic epidemiology studies
      R
      •
      MIT License
      •3•3•2•2•Updated Jul 17, 2019Jul 17, 2019

    • awesome-cancer-variant-databases

      Public
      A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
      MIT License
      •74•2•0•0•Updated Jul 17, 2019Jul 17, 2019

    • TCGAclinical

      Public
      Clinical data for the TCGA PanCancer Atlas
      0•18•0•0•Updated Jul 12, 2019Jul 12, 2019

    • moffitdocs

      Public
      R Markdown Templates for Moffitt Cancer Center
      R
      •2•2•0•0•Updated May 16, 2019May 16, 2019

    • different

      Public
      Compare Differences in Data Frames
      R
      •
      Other
      •0•0•8•0•Updated May 14, 2019May 14, 2019

    • fcdsExplorer

      Public
      R
      •0•0•0•0•Updated May 13, 2019May 13, 2019

    • fcds-poster

      Public
      🖼 fcds poster
      HTML
      •0•1•0•0•Updated May 1, 2019May 1, 2019

    • tricks

      Public
      Perform statistical tricks
      R
      •0•0•0•1•Updated Feb 1, 2019Feb 1, 2019

    • SEERreadr

      Public
      Read SEER Fixed Width Data Files
      R
      •
      Other
      •0•2•3•0•Updated Jan 2, 2019Jan 2, 2019

    • loglin

      Public
      Easy R Code for Convergent Log-Linear Models
      R
      •0•1•0•0•Updated Dec 5, 2018Dec 5, 2018

    • curatedProstateData

      Public
      TeX
      •0•2•44•0•Updated Oct 10, 2018Oct 10, 2018

    • cmediation

      Public
      Tools for Counterfactual Meditation Analysis
      R
      •0•0•0•0•Updated Oct 2, 2018Oct 2, 2018

    • phenoptrExtra

      Public
      Extra functions to extend phenoptr
      R
      •0•0•2•0•Updated Oct 1, 2018Oct 1, 2018

    • xCellCalls

      Public
      R
      •0•0•0•0•Updated Sep 17, 2018Sep 17, 2018

    • PAM50

      Public
      R
      •1•0•0•1•Updated Sep 17, 2018Sep 17, 2018

    • GSE46691

      Public
      Download and import GSE46691 into R with updated HUGO gene names
      R
      •1•0•0•0•Updated Sep 10, 2018Sep 10, 2018
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