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@GP2code Global Parkinson's Genetics Program - Code

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    59 repositories

    • POLG_multiancestry

      Public
      This is the online repository for the manuscript titled "Multi-ancestry analysis of POLG variants in Parkinson’s disease".
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 29, 2026Apr 29, 2026

    • Malaysian_LRRK2

      Public
      This is the online repository for the manuscript titled "LRRK2 mutation spectrum and association study in a multi-ethnic cohort of Malaysian Parkinson’s Disease…
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Apr 28, 2026Apr 28, 2026

    • GP2-Data-Dictionary

      Public
      3•2•0•1•Updated Apr 22, 2026Apr 22, 2026

    • SORL1_ADPD

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Apr 14, 2026Apr 14, 2026

    • GP2-precision-medicine

      Public
      This is the online repository for the manuscript titled "Bridging Genetics and Precision Medicine in Parkinson’s Disease through GP2".
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 26, 2026Mar 26, 2026

    • GP2-Project-Templates

      Public
      A repo to host data entry templates for active GP2 projects
      0•1•0•0•Updated Mar 24, 2026Mar 24, 2026

    • CNV-Finder

      Public
      Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.
      Python
      •
      Apache License 2.0
      •2•13•0•0•Updated Mar 16, 2026Mar 16, 2026

    • Cross_ancestry_PRS_AMR

      Public
      This repository contains all analyses for the manuscript titled "Cross-ancestry performance of Parkinson’s disease polygenic risk scores in admixed Latin Americ…
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Mar 2, 2026Mar 2, 2026

    • GP2-AFR-AAC-metaGWAS

      Public
      All materials for "Genome-wide Association Identifies Novel Etiological Insights Associated with Parkinson’s Disease in African and African Admixed Populations"
      Jupyter Notebook
      •
      MIT License
      •1•4•1•0•Updated Mar 1, 2026Mar 1, 2026

    • MAPThaplotype

      Public
      This is the online repository for the manuscript titled "Exploring MAPT-containing H1 and H2 haplotypes in Parkinson's Disease across diverse populations"
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Feb 12, 2026Feb 12, 2026

    • PDMultiome

      Public
      This is the online repository for the manuscript titled "Massive-scale single-nucleus multi-omics identifies novel rare noncoding drivers of Parkinson’s disease…
      R
      •
      MIT License
      •2•0•0•0•Updated Feb 9, 2026Feb 9, 2026

    • long-gwas-pipeline

      Public
      active development hub since 2025
      Python
      •1•3•0•0•Updated Feb 5, 2026Feb 5, 2026

    • GenoTools

      Public
      A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. …
      Python
      •
      Apache License 2.0
      •8•15•0•0•Updated Feb 5, 2026Feb 5, 2026

    • Taiwan-GWAS-and-PRS

      Public
      R
      •
      Other
      •0•0•0•0•Updated Jan 13, 2026Jan 13, 2026

    • GP2-Male-Female-GWAS

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Dec 29, 2025Dec 29, 2025

    • TMEM175_SCARB2_CTSB_PDrisk

      Public
      This is the online repository for the manuscript titled "TMEM175, SCARB2 and CTSB associations with Parkinson's disease risk across populations".
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Dec 29, 2025Dec 29, 2025

    • DNAJC13-PD-GeneBurden

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Dec 26, 2025Dec 26, 2025

    • Multiancestry_LRRK2_p.A419V

      Public
      This is the online repository for the manuscript titled "The LRRK2 p.A419V risk variant influences age of onset for Parkinson's disease in East Asian population…
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Dec 23, 2025Dec 23, 2025

    • SouthAfrican_XWAS

      Public
      This is the online repository for the manuscript titled "Insights into X-Linked Susceptibility to Parkinson’s Disease in the South African Population"
      Python
      •
      MIT License
      •0•0•0•0•Updated Dec 22, 2025Dec 22, 2025

    • MD-GAP-GP2-CPC

      Public
      This is the online repository for the manuscript titled "Clinical features, genetics, and pathology in a large series of movement disorder cases: a retrospectiv…
      R
      •
      MIT License
      •1•0•0•0•Updated Dec 22, 2025Dec 22, 2025

    • GP2-Genome-Browser

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Dec 11, 2025Dec 11, 2025

    • .github

      Public
      0•0•0•0•Updated Dec 1, 2025Dec 1, 2025

    • releases

      Public
      Code from various GP2 releases in perpetuity.
      WDL
      •1•1•0•0•Updated Dec 1, 2025Dec 1, 2025

    • GP2_DCD_WG_templates

      Public
      This is an online repository containing templates for preparing README and notebooks.
      Jupyter Notebook
      •0•0•0•0•Updated Nov 10, 2025Nov 10, 2025

    • Genetic_Testing_in_PD

      Public
      This is the online repository for the manuscript titled "How many do we miss? - Evaluation of age at onset and family history as selection criteria for genetic …
      MIT License
      •0•0•0•0•Updated Nov 10, 2025Nov 10, 2025

    • PD_genescreen_SouthAfr

      Public
      This is the online repository for the manuscript titled "Comprehensive genetic screening in Parkinson’s disease: NeuroBooster array insights from a South Africa…
      Shell
      •
      MIT License
      •0•0•0•0•Updated Oct 29, 2025Oct 29, 2025

    • PAR-ADPD

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Oct 24, 2025Oct 24, 2025

    • PD-GeneticCharacterization-inAFRandAAC

      Public
      This is the online repository for the manuscript titled "Large-scale genetic characterization of Parkinson’s disease in the African and African admixed populati…
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Aug 26, 2025Aug 26, 2025

    • GP2-WorkingGroups

      Public
      These are repositories and projects directly from GP2 members
      WDL
      •2•2•0•0•Updated Aug 22, 2025Aug 22, 2025

    • SouthAfrican_PD_PRS

      Public
      Shell
      •
      MIT License
      •0•0•0•0•Updated Jul 29, 2025Jul 29, 2025
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