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    31 repositories

    • DetectingManifolds

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Feb 12, 2026Feb 12, 2026

    • DynaMix-python

      Public
      Zero-shot forecasting of Dynamical Systems using DynaMix
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •7•19•0•0•Updated Feb 12, 2026Feb 12, 2026

    • DurstewitzLab.github.io

      Public
      HTML
      •1•1•0•0•Updated Nov 17, 2025Nov 17, 2025

    • DynaMix-julia

      Public
      Zero-shot forecasting of Dynamical Systems using DynaMix
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Oct 24, 2025Oct 24, 2025

    • ALRNN-DSR

      Public
      Implementation of the AL-RNN architecture for dynamical systems reconstruction and time series forecasting.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •5•13•0•0•Updated Apr 21, 2025Apr 21, 2025

    • HierarchicalDSR

      Public
      Hierarchical multi-system training framework for dynamical systems reconstruction (from Brenner et al. 2025 ICLR)
      Python
      •
      GNU General Public License v3.0
      •4•19•0•0•Updated Mar 7, 2025Mar 7, 2025

    • OODG-in-DSR

      Public
      Official Repository of the paper "Out-of-Domain Generalization in Dynamical Systems Reconstruction".
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jul 25, 2024Jul 25, 2024

    • RNNtopoDSR

      Public
      Julia
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jul 18, 2024Jul 18, 2024

    • CNS-2023

      Public
      A Guide to Reconstructing Dynamical Systems from Neural Measurements Using Recurrent Neural Networks
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •9•42•0•0•Updated Apr 12, 2024Apr 12, 2024

    • dendPLRNN

      Public
      Python
      •
      GNU General Public License v3.0
      •10•21•0•0•Updated Apr 12, 2024Apr 12, 2024

    • GTF-shPLRNN

      Public
      Julia
      •
      GNU General Public License v3.0
      •2•19•0•0•Updated Apr 12, 2024Apr 12, 2024

    • MTF

      Public
      Code for "Integrating Multimodal Data for Joint Generative Modeling of Complex Dynamics"
      Jupyter Notebook
      •0•6•0•0•Updated Dec 7, 2023Dec 7, 2023

    • SCYFI

      Public
      Code for NeurIPS paper "Bifurcations and loss jumps in RNN training" (2023)
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•6•0•0•Updated Oct 21, 2023Oct 21, 2023

    • PLRNNstsp

      Public
      Matlab code for state inference and parameter estimation in piecewise-linear recurrent neural network (PLRNN) models
      MATLAB
      •
      GNU General Public License v3.0
      •3•6•0•0•Updated May 20, 2023May 20, 2023

    • ChaosRNN

      Public
      Jupyter Notebook
      •4•20•0•0•Updated Jan 4, 2023Jan 4, 2023

    • mmPLRNN

      Public
      Python
      •5•6•0•0•Updated Jun 16, 2022Jun 16, 2022

    • reg-PLRNN

      Public
      MATLAB
      •2•9•0•0•Updated May 5, 2021May 5, 2021

    • Cell-Assembly-Detection

      Public
      Method for cell assembly detection in parallel spike trains
      MATLAB
      •5•11•0•1•Updated Dec 13, 2020Dec 13, 2020

    • ContPLRNN

      Public
      MATLAB
      •0•0•0•0•Updated Jun 30, 2020Jun 30, 2020

    • CADopti

      Public
      This repository contains MATLAB code for a machine learning algorithm for the detection of functional cell assemblies at their optimal time scale (CADopti) from…
      MATLAB
      •
      GNU General Public License v3.0
      •3•3•0•0•Updated Apr 11, 2020Apr 11, 2020

    • PLRNN_SSM

      Public
      MATLAB Code and data for Koppe, G et al. (2019), PLOS Computational Biology
      GNU General Public License v3.0
      •3•3•0•0•Updated Nov 4, 2019Nov 4, 2019

    • PARCS

      Public
      Detecting Multiple Change Points Using Paired Adaptive Regressors for Cumulative Sum (PARCS)
      MATLAB
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 2, 2018Oct 2, 2018

    • DataAnaBook

      Public
      MatLab code for Srpinger book 'Advanced Data Analysis in Neuroscience'
      GNU General Public License v3.0
      •10•22•0•0•Updated May 20, 2018May 20, 2018

    • BehavioralData_Ana

      Public
      MatLab Code and data for Koppe, G et al. (2017), PLOS Biology
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 5, 2018Jan 5, 2018

    • stationary_segmentation

      Public
      Method for stationarity-segmentation of spike train data
      MATLAB
      •0•0•0•0•Updated Jan 4, 2018Jan 4, 2018

    • AdExMFE

      Public
      Analytical Approximation of the Firing Rate of an aEIF Neuron in the Presence of Synaptic Noise
      MATLAB
      •0•0•0•0•Updated Jan 4, 2018Jan 4, 2018

    • FitSimpAdEx2Data

      Public
      Fitting the simplified AdEx model to physiological data
      MATLAB
      •1•0•0•0•Updated Jan 4, 2018Jan 4, 2018

    • NTR_1.5

      Public
      Neural Trajectories Reconstruction Matlab Toolbox 1.5 beta
      MATLAB
      •0•1•0•0•Updated Jan 4, 2018Jan 4, 2018

    • DynBasIrregSpNMDA

      Public
      Dynamical basis of irregular spiking in NMDA-driven prefrontal cortex neurons
      AMPL
      •0•1•0•0•Updated Jan 4, 2018Jan 4, 2018

    • SONI

      Public
      Self-Organizing Neural Integrator Predicts Interval Times through Climbing Activity
      MATLAB
      •0•0•0•0•Updated Jan 4, 2018Jan 4, 2018
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