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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu shesmu Public

    Decision-driven action launching system

    Java 12 4

  2. djerba djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 12 5

  3. vidarr vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 253 repositories
  • shesmu Public

    Decision-driven action launching system

    oicr-gsi/shesmu’s past year of commit activity
    Java 12 MIT 4 0 5 Updated Apr 23, 2026
  • nabu Public

    QC tracking for files via a web service

    oicr-gsi/nabu’s past year of commit activity
    JavaScript 0 MIT 0 2 8 Updated Apr 22, 2026
  • Gaea Public

    Register genomics data in EGA

    oicr-gsi/Gaea’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Apr 22, 2026
  • djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    oicr-gsi/djerba’s past year of commit activity
    Python 12 GPL-3.0 5 10 2 Updated Apr 22, 2026
  • hsMetrics Public

    Workflow to run HSMetrics

    oicr-gsi/hsMetrics’s past year of commit activity
    WDL 0 0 0 0 Updated Apr 22, 2026
  • ichorCNA Public

    workflow for estimating the fraction of tumour in cell-free DNA from sWGS

    oicr-gsi/ichorCNA’s past year of commit activity
    WDL 1 1 0 1 Updated Apr 22, 2026
  • umiConsensus Public

    Workflow to generate consensus sequence bases on UMIs using consensusCruncher.

    oicr-gsi/umiConsensus’s past year of commit activity
    WDL 1 0 0 0 Updated Apr 22, 2026
  • flask_ui Public

    projectconfig UI

    oicr-gsi/flask_ui’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Apr 21, 2026
  • waterzooi Public
    oicr-gsi/waterzooi’s past year of commit activity
    Python 0 0 0 0 Updated Apr 21, 2026
  • cardea Public

    Case data API

    oicr-gsi/cardea’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Apr 20, 2026
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