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Add permitted keys for ext map and rational#3993

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mahesh-panchal merged 2 commits intonf-core:mainfrom
mahesh-panchal:docs/ext-fields
Mar 12, 2026
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Add permitted keys for ext map and rational#3993
mahesh-panchal merged 2 commits intonf-core:mainfrom
mahesh-panchal:docs/ext-fields

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@mahesh-panchal mahesh-panchal commented Mar 11, 2026

Adds which keys are permitted in the ext map, and the rational behind using the ext map.

Closes #3412

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netlify Bot commented Mar 11, 2026

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@nf-core-bot fix linting

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could you also make a PR against the docs-v2 branch with these changes please

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A separate PR or change where this one is going to?

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Or rebase against the docs-v2 branch?

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mashehu commented Mar 12, 2026

A separate PR, so we have it in the current version as well as in v2

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mashehu commented Mar 12, 2026

can you write an issue on tools so we lint for this? Or is there another way we can quickly validate this?

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mahesh-panchal commented Mar 12, 2026

At the moment I'm using a bash command:
nf-core/modules#8716 (comment)

But I'll make an issue on linting too (I'm surprised there isn't one).

@mahesh-panchal mahesh-panchal merged commit 412272f into nf-core:main Mar 12, 2026
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@mahesh-panchal mahesh-panchal deleted the docs/ext-fields branch April 13, 2026 17:26
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Document use of task.ext fields

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