Skip to content

Fix taxonomy lookup and update dbCAN URLs#50

Merged
nextgenusfs merged 2 commits intomainfrom
review-taxonomy-mr
Apr 2, 2026
Merged

Fix taxonomy lookup and update dbCAN URLs#50
nextgenusfs merged 2 commits intomainfrom
review-taxonomy-mr

Conversation

@nextgenusfs
Copy link
Copy Markdown
Owner

This PR includes fixes for:

  1. Missing taxonomy kingdom keys from JGI breaking the pipeline (safeguards added to predict.py and utilities.py).
  2. Unreachable dbCAN database URLs updated to their new domains at pro.unl.edu in downloads.json.

Pull Request opened by Augment Code with guidance from the PR author

Jon Palmer added 2 commits April 2, 2026 12:00
Agent-Id: agent-5c7f232c-bd2a-4764-9f0c-3f4058692304
Agent-Id: agent-5c7f232c-bd2a-4764-9f0c-3f4058692304
@nextgenusfs nextgenusfs merged commit dad41d2 into main Apr 2, 2026
7 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant