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Canvas overview

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mjsull edited this page Sep 15, 2015 · 1 revision

Using the canvas

The contigs and the reference may be moved individually by dragging them with the left mouse button. The canvas can be zoomed in and out by using the mousewheel or using the “w” or “d” key. Contigs may be shrunk or stretched in the x dimension by using the “a” and “d” key. Context menus can be brought up by right clicking a contig or sequence alignment allowing the user to reverse, remove, duplicate or bring up details about that contig or alignment.

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  1. Introduction to Contiguity
  2. Requirements
  3. Installation
  4. Citing Contiguity
  5. Workflow and Examples
  6. Finishing a PacBio HGAP assembly
  7. Ordering contigs
  8. Finding passenger genes
  9. Identifying plasmid contigs
  10. Menu overview
  11. File
  12. View
  13. Tools
  14. Viewing the Assembly
  15. Canvas overview
  16. Context menus
  17. Creating comparisons
  18. Comparison to a reference
  19. Self comparison
  20. Finding paths
  21. Creating scaffolds
  22. Creating scaffolds from a CAG
  23. Creating scaffolds from a PacBio Assembly
  24. Constructing a Contig adjacency graph
  25. CAG creation GUI
  26. CAG creation command-line

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