CEMPRA Documentation

R Package: https://github.com/essatech/CEMPRA
Shiny App: https://github.com/essatech/CEMPRAShiny
Shiny App (Live): https://essa.shinyapps.io/CEMPRAShiny/

Cumulative Effects Model for Prioritizing Recovery Actions (CEMPRA) Guidance Documentation.

Live Site: https://mattjbayly.github.io/CEMPRA_documentation/

Publishing Workflow

Everything lives on the main branch. GitHub Pages serves from main/docs.

# Edit .qmd files, then:
quarto render --to html
git add .
git commit -m "Update site"
git push origin main

Site updates within a few minutes of pushing.

Name		Name	Last commit message	Last commit date
Latest commit History 64 Commits
.claude		.claude
assets		assets
docs		docs
images		images
sample_data		sample_data
.gitignore		.gitignore
.nojekyll		.nojekyll
01_intro.qmd		01_intro.qmd
02_stressor_response.qmd		02_stressor_response.qmd
03_pathways_endpoints.qmd		03_pathways_endpoints.qmd
04_initial_setup.qmd		04_initial_setup.qmd
05_data_inputs.qmd		05_data_inputs.qmd
06_r_shiny_app.qmd		06_r_shiny_app.qmd
07_life_cycle_model.qmd		07_life_cycle_model.qmd
08_life_cycle_model_part2.qmd		08_life_cycle_model_part2.qmd
09_ndss_case_study.qmd		09_ndss_case_study.qmd
09_stressor_response_library.qmd		09_stressor_response_library.qmd
10_case_study_applications.qmd		10_case_study_applications.qmd
11_r_package_tutorials.qmd		11_r_package_tutorials.qmd
12_conclusions.qmd		12_conclusions.qmd
CEMPRA_Manual.Rproj		CEMPRA_Manual.Rproj
README.md		README.md
_quarto.yml		_quarto.yml
apa.csl		apa.csl
appendix_formula_builder.qmd		appendix_formula_builder.qmd
appendix_interaction_matrix.qmd		appendix_interaction_matrix.qmd
appendix_ndss_case_study.qmd		appendix_ndss_case_study.qmd
appendix_socio_economic.qmd		appendix_socio_economic.qmd
cover.png		cover.png
favicon.ico		favicon.ico
favicon.png		favicon.png
google325989be4aa51fe7.html		google325989be4aa51fe7.html
index.knit.md		index.knit.md
index.qmd		index.qmd
references.bib		references.bib
references.qmd		references.qmd