Skip to content
@matsengrp

Matsen Group

Popular repositories Loading

  1. phippery phippery Public

    Python 19 2

  2. claude-code-agents claude-code-agents Public

    Agents for Claude Code

    19

  3. gctree gctree Public

    GCtree: phylogenetic inference of genotype-collapsed trees

    Python 18 2

  4. olmsted olmsted Public

    B-cell repertoire and clonal family tree explorer

    JavaScript 18 6

  5. sumrep sumrep Public

    Summary statistics for repertoires

    R 17 6

  6. vampire vampire Public

    🧛 Deep generative models for TCR sequences 🧛

    Python 17 4

Repositories

Showing 10 of 133 repositories
  • olmsted Public

    B-cell repertoire and clonal family tree explorer

    matsengrp/olmsted’s past year of commit activity
    JavaScript 18 AGPL-3.0 6 17 6 Updated Mar 13, 2026
  • partis-zig-core Public
    matsengrp/partis-zig-core’s past year of commit activity
    Zig 0 0 1 0 Updated Mar 12, 2026
  • larch Public

    Inference and manipulation of history DAGs

    matsengrp/larch’s past year of commit activity
    C++ 2 MIT 2 19 3 Updated Mar 6, 2026
  • SARS-CoV-2_spike_multidms Public

    Comparing DMS datasets for spike from Delta, Omicron BA.1, and Omicron BA.2

    matsengrp/SARS-CoV-2_spike_multidms’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Mar 4, 2026
  • multidms Public

    Joint modeling of multiple deep mutational scanning experiments

    matsengrp/multidms’s past year of commit activity
    Jupyter Notebook 2 MIT 0 16 1 Updated Mar 4, 2026
  • gcreplay Public

    This repository contains the code and data for the analysis of B cell receptor (BCR) sequences isolated in Germinal Center (GC) - Replay experiments.

    matsengrp/gcreplay’s past year of commit activity
    Jupyter Notebook 2 GPL-3.0 0 4 0 Updated Mar 2, 2026
  • historydag Public
    matsengrp/historydag’s past year of commit activity
    Python 0 GPL-3.0 1 13 1 Updated Feb 27, 2026
  • dnsm-experiments-mbe Public

    Deep Natural Selection Model (DNSM) experiments archive for MBE publication

    matsengrp/dnsm-experiments-mbe’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Feb 25, 2026
  • fully-heterochronous-f-matrix Public

    F-matrix representation and sampling for ranked tree shapes

    matsengrp/fully-heterochronous-f-matrix’s past year of commit activity
    R 0 0 0 0 Updated Feb 19, 2026
  • partis Public Forked from psathyrella/partis

    B- and T-cell receptor sequence annotation, simulation, clonal family, and germline inference

    matsengrp/partis’s past year of commit activity
    Python 0 GPL-3.0 34 0 0 Updated Feb 13, 2026
View all repositories

Most used topics

Loading…