Two locus general matrix#16

Closed

lkirk wants to merge 92 commits intoupstream-mainfrom

two-locus-general-matrix

Commits on Dec 3, 2025

cite which version of Fst; closes #858 (#3346)
petrelharp
authored
Raise error if pop passed to samples is not an integer (#3344)

hyanwong
and
petrelharp
authored

Commits on Dec 4, 2025

Commits on Dec 5, 2025

Mark migrations as legacy, and clarify backward-time definition (#3348)
hyanwong
authored

Commits on Dec 29, 2025

Fix duplication typo in stats documentation (#3357)
hyanwong
authored

Commits on Jan 5, 2026

Tiny typo (#3360)
gregorgorjanc
authored

Commits on Jan 6, 2026

Commits on Jan 7, 2026

remaining edits from #3359

petrelharp
authored and
hyanwong
committed

Commits on Jan 19, 2026

Commits on Jan 20, 2026

Update macos image version

benjeffery
authored and
hyanwong
committed

Commits on Jan 21, 2026

Fix link in PR template

hugovk
authored and
jeromekelleher
committed
Remove redundant Python 2 code

hugovk
authored and
jeromekelleher
committed
Upgrade syntax for Python 3.10+

hugovk
authored and
jeromekelleher
committed

Commits on Jan 23, 2026

Bump GitHub Actions

hugovk
authored and
jeromekelleher
committed
Add colour to GitHub Actions logs for readability

hugovk
authored and
jeromekelleher
committed
macos-14 is ARM-only

hugovk
authored and
jeromekelleher
committed
Fix deprecation warning in GHA

hugovk
authored and
jeromekelleher
committed

Commits on Feb 2, 2026

Add packaging check to CI

jeromekelleher
authored and
benjeffery
committed
Use simple SPDX identifier for license

jeromekelleher
authored and
benjeffery
committed
Switch to reusable workflow

jeromekelleher
authored and
benjeffery
committed

Commits on Feb 12, 2026

Migrate to clang-format 21.1.8
jeromekelleher
committed

Commits on Feb 27, 2026

Commits on Mar 2, 2026

Finalize workflow pins and trigger policy
jeromekelleher
committed

Commits on Mar 4, 2026

Commits on Mar 6, 2026