PhyInC Logo (pronounced Fink Logo) for short is a tool to take .fa and .tree files to create sequence Logo and save as a .PNG file.
For dependencies, start a virtual env as good practice:
python3 -m venv . source venv/bin/activate pip3 install biopython weblogo matplotlib numpy
If you are on mac
brew install ghostscript
Run Example
python3 src/phyinc.py ./examples/ex1_t1.tree ./examples/ex1.fa
This should create a PDF in the examples folder.
README.md
src/
|-- config.py
|-- phyinc.py
examples/
|-- ex1_t1.tree
|-- ex1.fa
config.py is a configuration file used to save the confirguration from phyinc
ex1_t1.tree is a .tree file provided as an example
ex1.fa is a .fa file provided as an example
phyinc.py is the program
Regular_logo.pdf is the output if you run the program on the example files provided
With_PIC_logo.png is the output if you run the program on the example files provided
GPLv3