[0.4.0] add support for Needleman-Wunsch with scores; update Python version support#23

Merged

andrew-titus merged 21 commits intomainfrom

Apr 13, 2026

Commits on Apr 6, 2026

[0.4.0] add support for Needleman-Wunsch with scores; update Python version support

Drew Titus
and
claude
committed
Lint
Drew Titus
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Fix lint again?
Drew Titus
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Replace legacy linting toolchain with ruff and mypy

Drew Titus
and
claude
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Modernize linting/testing setup
Drew Titus
committed

Commits on Apr 7, 2026

Simplify linter matrix
Drew Titus
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Fix incorrect expected values in needleman_wunsch_with_scores tests

Drew Titus
and
claude
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Update CHANGELOG and README for v0.4.0

Drew Titus
and
claude
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Update Cargo for pyo3 security vuln and 2024 Rust
Drew Titus
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Update CHANGELOG for PyO3/Cargo changes

Drew Titus
and
claude
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Revert Rust edition to 2021, drop maturin extension-module feature, update CHANGELOG

Drew Titus
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claude
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Update pymodule signature for PyO3 0.28 Bound API

Drew Titus
and
claude
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Lower stable ABI minimum to Python 3.10 to match requires-python

Drew Titus
and
claude
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Refactor lint script and Rust NW code; update CHANGELOG

Drew Titus
and
claude
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Lint; update codecov config
Drew Titus
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Add perf test for needleman_wunsch_with_scores

Drew Titus
and
claude
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Update perf range for CI
Drew Titus
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Lower trials for NW-with-scores
Drew Titus
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Adjust mem trials as well
Drew Titus
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Commits on Apr 13, 2026

Change gap from kwarg to arg
Drew Titus
committed
Simplify indexing
Drew Titus
committed