The Graph Style specification can be associated with a visualized graph. GS works very well with structural graph formats such as JGF as you can associate multiple graph style descriptions with a set of graphs to highlight associated metadata (e.g. highlight proteins in red versus carbohydrates in blue). This allows you to keep visualization style-specific information out of the graph structure and allows easy application of multiple visual styles with a given graph.
jsongraph/json-graph-style
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