Skip to content
View jlchen5's full-sized avatar
16 followers · 22 following

Achievements

Achievement: QuickdrawAchievement: Pull SharkAchievement: YOLO

Achievements

Achievement: QuickdrawAchievement: Pull SharkAchievement: YOLO

Block or report jlchen5

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don't include any personal information such as legal names or email addresses. Markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
jlchen5/README.md

🖐 Hello, I'm Chen

Bioinformatics & Computational Biology Researcher | Deep Learning Enthusiast

This is my hub for technical projects, primarily focusing on code, tools, and analysis pipelines related to genomics data analysis, single-cell sequencing (scRNA-seq), and the application of deep learning in life sciences.

🛠️ Tech Stack & Core Domains

  • Bioinformatics Analysis: NGS data processing, sequence analysis, scRNA-seq analysis pipeline construction.
  • Programming Languages: Proficient in Python, Shell, and Jupyter Notebook for data analysis and prototyping.
  • Tool Development: Creating tools to enhance computational efficiency (e.g., fmd5sum).
  • Deep Learning: Exploring deep learning models for interpreting genomics data.

📌 Featured Projects

Project Description Tech Stack
https://github.com/jlchen5 Reproduction and in-depth analysis of data from Li et al., published in Cell Regeneration (2022). HTML
NGS Read Depth Calculator A repository for calculating sequencing read depth for Next-Generation Sequencing (NGS) data. Shell
scRNA-seq Analysis Pipeline A comprehensive single-cell RNA sequencing analysis pipeline designed to resolve most common analysis challenges. Jupyter Notebook
fmd5sum A faster implementation of the md5sum tool, published on https://pypi.org/project/fmd5sum/. Python
Deep Learning in Genomics A dedicated repository for exploring the application of deep learning techniques in genomics. Python
DeepSeek-handbook Handbook and practical notes for using the DeepSeek model. -

📈 Activity Overview

My primary contributions are in the form of code commits, with additional participation in Pull Requests and Issues. You can view my https://github.com/jlchen5 for more detailed activity.

📫 Connect With Me

  • GitHub: You can directly ask me questions or initiate technical discussions via the Issues feature here on https://github.com/jlchen5.
  • For other matters, it is recommended to contact me via the email or social platforms listed in my profile.

Thanks for visiting! Feel free to explore my projects. I look forward to technical exchanges.

Pinned Loading

  1. CELR-D-22-00015 CELR-D-22-00015 Public

    Repository that contains the analysis from Li et al. Cell Regeneration, 2022.

    HTML 2 1

  2. sequencing-read-depth-calculate sequencing-read-depth-calculate Public

    The repository is used to calculate the NGS data sequencing read depth.

    Shell 1

  3. scRNA-seq-analysis scRNA-seq-analysis Public

    For scRNA-seq analysis, this pipeline can resolve most of the problems that you may encounter.

    Jupyter Notebook 1 1

  4. fmd5sum fmd5sum Public

    fmd5sum: Made the md5sum faster and install on [PyPi](https://pypi.org/project/fmd5sum/)

    Python 2 1

  5. Deep-Learning-in-Genomics Deep-Learning-in-Genomics Public

    This repository appears to be dedicated to exploring the application of deep learning techniques in the field of genomics.

    Python 1

  6. DeepSeek-handbook DeepSeek-handbook Public

    DeepSeek使用手册（DeepSeek-handbook）

    1