Search results

Update StringTie params

Status: Open.

#35 In griffithlab/rnaseq_tutorial_wiki;

· jasonwalker80 opened on Sep 14, 2017

Grep for and remove unnecessary references to original Tuxedo

Status: Open.

#25 In griffithlab/rnaseq_tutorial_wiki;

· jasonwalker80 opened on Nov 14, 2016

Use/download R Script to run ballgown

Status: Open.

#23 In griffithlab/rnaseq_tutorial_wiki;

· jasonwalker80 opened on Nov 10, 2016

Replace iGenomes with HISAT2 bundles.

Status: Open.

#22 In griffithlab/rnaseq_tutorial_wiki;

· jasonwalker80 opened on Nov 9, 2016

Work on Differential Splicing module after Stringtie/Ballgown conversion

Status: Open.

#20 In griffithlab/rnaseq_tutorial_wiki;

· jasonwalker80 opened on Nov 8, 2016

Replace htseq-count with featureCounts

Status: Open.

#19 In griffithlab/rnaseq_tutorial_wiki;

· jasonwalker80 opened on Nov 8, 2016

CWL/Docker pipeline that can be run locally, serially with cwl-runner

Status: Open.

#13 In griffithlab/rnaseq_tutorial_wiki;

· jasonwalker80 opened on Oct 19, 2016

Make RSeQC required

Status: Open.

#10 In griffithlab/rnaseq_tutorial_wiki;

· jasonwalker80 opened on Oct 7, 2016

Incorporate the 'new-Tuxedo' nature protocols data into Practical Exercise 5

Status: Open.

#9 In griffithlab/rnaseq_tutorial_wiki;

· jasonwalker80 opened on Oct 7, 2016

Convert from samtools to sambamba

Status: Open.

#8 In griffithlab/rnaseq_tutorial_wiki;

· jasonwalker80 opened on Oct 7, 2016