Teaching material for the "Molecular Phylogenetics" classes of the MSc in Bioinformatics at the University of Bologna. Curated by Giobbe Forni with the contribution of Jacopo Martelossi and Andrea Luchetti.
- W1_L01 - intro to the course + software installation [ slides + practicals ]
- W1_L02 - phylogenetics 101 pt. A [ slides + practicals ]
- W1_L03 - phylogenetics 101 pt. B [ slides + practicals ]
- W2_L04 - orthology infererence and taxon sampling [ slides + practicals ]
- W2_L05 - sequence alignement and filtering [ slides + practicals ]
- W2_L06 - distance-based versus charcter-based algorythms [ slides ] + practicals ]
- W3_L07 - MK models of molecular evolution [ slides + practicals ]
- W3_L08 - Maximum Likelihood (ML) [ slides + practicals ]
- W3_L09 - Bayesian Inference (BI)[ slides + practicals ]
- W3_L10 - support metrics [ slides + practicals ]
- W6_L11 - complex substitution models [ slides + practicals ]
- W6_L12 - discordance, ILS & the coalescent [ slides + practicals ]
- W7_L13 - stochastic and systematic bias [ slides + practicals ]
- W7_L14 - divergence times analyses [ slides + practicals ]
- W8_L15 - inferring selection [ slides + practicals ]
- W8_L16 - modelling trait evolution on phylogenies [ slides + practicals ]
Other important stuff:
- Recordings: here
- Exam sample: here.
- Single slides pack: WIP
- date of the exam may the 25th from 15:00 to 16 in aula 2D.
For any inquiry write to: giobbe.forni2@unibo.it