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gaussian grbm initialization #71
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| @@ -0,0 +1,8 @@ | ||||||
| --- | ||||||
| features: | ||||||
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Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. More an upgrade rather than a feature, no?
Suggested change
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| - | | ||||||
| Initialize ``GraphRestrictedBoltzmannMachine`` weights using Gaussian | ||||||
| random variables with standard deviation equal to :math:`1/\sqrt(N)`, where N | ||||||
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Collaborator
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more.
Suggested change
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| denotes the number of nodes in the GRBM. The weight-initialization strategy is grounded in `Hinton's practical guide for RBM training <https://www.cs.toronto.edu/~hinton/absps/guideTR.pdf>`_, which recommends sampling weights from a Gaussian distribution with mean 0 and standard deviation 0.01 (for zero-one-valued RBMs). The scaling factor of :math:`1/\sqrt(N)` ensures that the energy functional remains extensive and initializes the GRBM in a paramagnetic regime, consistent with the `Sherrington-Kirkpatrick model<https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.35.1792>`_. | ||||||
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Contributor
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Better add some line breaks here, splitting the full paragraph on several lines. |
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@@ -78,12 +78,11 @@ def forward(self, x: torch.Tensor) -> torch.Tensor: | |
| # are the models themselves | ||
| latent_dims_list = [1, 2] | ||
| self.encoders = {i: Encoder(i) for i in latent_dims_list} | ||
| # self.decoders is independent of number of latent dims, but we also create a dict to separate | ||
| # them | ||
| # self.decoders is independent of number of latent dims, but we also create a dict to | ||
| # separate them | ||
| self.decoders = {i: Decoder(latent_features, input_features) for i in latent_dims_list} | ||
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| # self.dvaes is a dict whose keys are the numbers of latent dims and the values are the models | ||
| # themselves | ||
| # self.dvaes is a dict whose keys are the numbers of latent dims and the values are the | ||
| # models themselves | ||
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| self.dvaes = {i: DVAE(self.encoders[i], self.decoders[i]) for i in latent_dims_list} | ||
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@@ -248,19 +247,22 @@ def test_latent_to_discrete(self, n_samples, expected): | |
| @parameterized.expand([(i, j) for i in range(1, 3) for j in [0, 1, 5, 1000]]) | ||
| def test_forward(self, n_latent_dims, n_samples): | ||
| """Test the forward method.""" | ||
| torch.manual_seed(1234) # Set seed for reproducibility of latent_to_discrete sampling | ||
| expected_latents = self.encoders[n_latent_dims](self.data) | ||
| expected_discretes = self.dvaes[n_latent_dims].latent_to_discrete( | ||
| expected_latents, n_samples | ||
| ) | ||
| expected_reconstructed_x = self.decoders[n_latent_dims](expected_discretes) | ||
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| torch.manual_seed(1234) # Set seed again to ensure that the sampling in the forward method | ||
| # is the same as in the expected_discretes | ||
| latents, discretes, reconstructed_x = self.dvaes[n_latent_dims].forward( | ||
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Collaborator
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Sorry if I asked this in the first review for DVAE and forgot, but why does this test call the |
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| x=self.data, n_samples=n_samples | ||
| ) | ||
| torch.testing.assert_close(latents, expected_latents) | ||
| torch.testing.assert_close(discretes, expected_discretes) | ||
| torch.testing.assert_close(reconstructed_x, expected_reconstructed_x) | ||
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| assert torch.equal(reconstructed_x, expected_reconstructed_x) | ||
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Collaborator
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. @VolodyaCO was this the fix to failing tests? Are these tests sensitive to the seed..? |
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| assert torch.equal(discretes, expected_discretes) | ||
| assert torch.equal(latents, expected_latents) | ||
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| if __name__ == "__main__": | ||
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