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Pull requests: dnanexus/dx-toolkit
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APPS-3949: Add archivalManagement field to membership expectations
#1551
opened Apr 23, 2026 by
nanguyen-dnanexus
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APPS-3923: Default -profile docker for nf-core pipelines
#1549
opened Apr 14, 2026 by
jhuynh-cmd
•
Draft
Bump org.apache.logging.log4j:log4j-core from 2.17.1 to 2.25.4 in /src/java
dependencies
Pull requests that update a dependency file
java
Pull requests that update Java code
#1548
opened Apr 10, 2026 by
dependabot
Bot
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APPS-3884: Add support for preserving and restoring mtime for uploaded/downloaded files to the platform
#1547
opened Apr 10, 2026 by
windok
Contributor
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APPS-3874 Enhance Nextflow version resolution tests with manifest-driven approach
#1546
opened Apr 9, 2026 by
jhuynh-cmd
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APPS-3872: Improve nextflow description for input fields
#1536
opened Mar 17, 2026 by
windok
Contributor
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Bump com.fasterxml.jackson.core:jackson-core from 2.18.2 to 2.18.6 in /src/java
dependencies
Pull requests that update a dependency file
java
Pull requests that update Java code
#1533
opened Mar 1, 2026 by
dependabot
Bot
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Bump setuptools from 69.0.2 to 78.1.1 in /src/python
dependencies
Pull requests that update a dependency file
python
Pull requests that update Python code
#1532
opened Feb 27, 2026 by
dependabot
Bot
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Relax websocket-client upper bound to include 1.9.0
#1530
opened Feb 26, 2026 by
chenrui333
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[WIP][APPS-3752] dynamic instance type detection
#1527
opened Feb 13, 2026 by
truongle1501
Contributor
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Bump pip from 23.3.1 to 26.0 in /src/python
dependencies
Pull requests that update a dependency file
python
Pull requests that update Python code
#1519
opened Feb 2, 2026 by
dependabot
Bot
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Bump wheel from 0.42.0 to 0.46.2 in /src/python
dependencies
Pull requests that update a dependency file
python
Pull requests that update Python code
#1516
opened Jan 22, 2026 by
dependabot
Bot
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[DEVEX-2597] [Nextflow] Parsing nextflow_schema.json does not support arrays of strings for the 'type' attribute
#1509
opened Nov 25, 2025 by
jsitarova-dnanexus
Collaborator
•
Draft
[DEVEX-2565] NPI app on OCI - return older version of nextflow assets
#1495
opened Sep 29, 2025 by
jsitarova-dnanexus
Collaborator
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Bump mock from 2.0.0 to 5.2.0 in /src/python
dependencies
Pull requests that update a dependency file
python
Pull requests that update Python code
#1449
opened Mar 10, 2025 by
dependabot
Bot
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Bump pip from 23.3.1 to 25.0.1 in /src/python
dependencies
Pull requests that update a dependency file
python
Pull requests that update Python code
#1437
opened Feb 10, 2025 by
dependabot
Bot
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Bump xattr from 0.10.1 to 1.1.4 in /src/python
dependencies
Pull requests that update a dependency file
python
Pull requests that update Python code
#1424
opened Jan 13, 2025 by
dependabot
Bot
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[APPS-2933] Test nextflow nf-core pipelines on Ubuntu 24.04 AEE
#1413
opened Oct 29, 2024 by
jsitarova-dnanexus
Collaborator
•
Draft
DEVEX-2418
bug
python
Pull requests that update Python code
#1409
opened Oct 18, 2024 by
vkuban-dx
Collaborator
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TIP-3821 Update jackson libraries to work well with Spark 3.5.2
#1407
opened Oct 17, 2024 by
sushanthdn
Collaborator
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Bump parameterized from 0.8.1 to 0.9.0 in /src/python
dependencies
Pull requests that update a dependency file
python
Pull requests that update Python code
#1302
opened Dec 18, 2023 by
dependabot
Bot
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Bump pexpect from 4.6 to 4.9.0 in /src/python
dependencies
Pull requests that update a dependency file
python
Pull requests that update Python code
#1300
opened Dec 18, 2023 by
dependabot
Bot
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