chore: deprecate parseLines method in all parsers

[stevenhua0320]

@sbillinge ready to review. Note that because of the inheritance structure, I decide to deprecate the method one by one to avoid any potential break in the code.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 99.13%. Comparing base (6286234) to head (0f4ddda).
⚠️ Report is 3 commits behind head on v3.4.0.

Additional details and impacted files

@@           Coverage Diff           @@
##           v3.4.0     #173   +/-   ##
=======================================
  Coverage   99.13%   99.13%           
=======================================
  Files          14       14           
  Lines        2301     2315   +14     
=======================================
+ Hits         2281     2295   +14     
  Misses         20       20           

Files with missing lines	Coverage Δ
tests/test_p_cif.py	99.65% <100.00%> (+0.01%)	⬆️

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