Add dev container collection focused on multi-repo and rapid renv library setup#660
Open
MiguelRodo wants to merge 4 commits intodevcontainers:gh-pagesfrom
Open
Add dev container collection focused on multi-repo and rapid renv library setup#660MiguelRodo wants to merge 4 commits intodevcontainers:gh-pagesfrom
MiguelRodo wants to merge 4 commits intodevcontainers:gh-pagesfrom
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
What type of PR is this?
Related Issues
None.
Description
I have several devcontainer features that I frequently use, available at https://github.com/MiguelRodo/DevContainerFeatures. The two main ones included in this collection are:
repos— Installs a utility to easily clone and set up multiple Git repositories from a single, simplerepos.listfile.renv-cache— builds and installs R packages fromrenv.lockduring container build into a globalrenvcache that persists past the container build and is automatically available to R analyses. This improves container start time and ensures package state is more easily restored in the future.I am not aware of an alternative to the
reposfeature. Therenv-cachefeature is quite distinct from therockerrenv-cachefeature, which does not install packages into a cache during container build time.It also has three other, more minor features:
apptainer— Installs Apptainer.mermaid— Installs the Mermaid CLI.fit-sne— Installs FIt-SNE, an efficient implementation of t-SNE.I highly doubt an equivalent to fit-sne is available, and I could not see anything that obviously set up mermaid or apptainer.
Collection checklist