Typeset Figures

Figures/Plots

\begin{figure}[H] % {{{
% Label fig:test_plot
   \centering
      \begin{tikzpicture}
         \node[pictureframe]{%
            \begin{minipage}{0.45\textwidth}%
               \begin{center}
                  <<test_plot, cache=T, fig.width=3, fig.height=2.5, out.width='\\textwidth', echo=FALSE>>=
                     suppressPackageStartupMessages(library(ggplot2))
                     ggplot(cars, aes(x=dist, y=speed)) +
                     geom_point(shape=1) + geom_smooth(method = "lm", size = 1) +
                     theme_bw() +
                     opts(panel.grid.major=theme_blank(), panel.grid.minor=theme_blank())
                  @
               \end{center}
            \end{minipage}
         };
      \end{tikzpicture}
   \caption{Lorem ipsum dolor sit amet, consectetuer adipiscing elit. Aenean
   commodo ligula eget dolor. Aenean massa. Cum sociis natoque penatibus et magnis
   dis parturient montes, nascetur ridiculus mus. Donec quam felis, ultricies nec,
   pellentesque eu, pretium quis, sem.}
   \label{fig:test_plot}
\end{figure} % }}}

\begin{figure*} % {{{
% Label fig:test_plot_two
   \centering
      \begin{tikzpicture}
         \node[pictureframe]{%
            \begin{minipage}{0.97\textwidth}%
               \begin{center}
                  <<test_plot_two, cache=T, fig.width=3, fig.height=2.5, out.width='0.45\\textwidth', echo=FALSE>>=
                     suppressPackageStartupMessages(library(ggplot2))
                     #plotting
                     par(mar=c(4,4,.1,.1),cex.lab=.95,cex.axis=.9,mgp=c(2,.7,0),tcl=-.3)

                     ggplot(movies, aes(x=rating)) +
                     geom_density() +
                     theme_bw() +
                     theme(panel.grid.major=element_blank(), panel.grid.minor=element_blank())

                     ggplot(mtcars, aes(factor(cyl), mpg)) +
                     geom_boxplot() +
                     theme_bw() +
                     theme(panel.grid.major=element_blank(), panel.grid.minor=element_blank())
                  @
               \end{center}
            \end{minipage}
         };
      \end{tikzpicture}
   \caption{Lorem ipsum dolor sit amet, consectetuer adipiscing elit. Aenean
   commodo ligula eget dolor. Aenean massa. Cum sociis natoque penatibus et magnis
   dis parturient montes, nascetur ridiculus mus. Donec quam felis, ultricies nec,
   pellentesque eu, pretium quis, sem.}
   \label{fig:test_plot_two}
\end{figure*} % }}}

Distribution Maps

The Open-Science-Paper offers a command for simple distribution map inclusion. You can use it as follows.

\ospDistributionMap[%
	mappath=osp/graphics/MapPelargoniumSidoides.pdf,%
	label=fig:KaplandPelargonie]{%
	Distribution of Pelargonium sidoides. Die maps was created from data
	available via Global Biodiversity Information Facility database.  The
	distribution is restricted to regions in Lesotho and South Africa.
	(Rot).}

This is a framed one column distribution map without an additional panel for the species name and picture.

\ospDistributionMap*[%
	mappath=osp/graphics/MapPelargoniumSidoides.pdf,%
	picpath=osp/graphics/Pelargoniumsidoides.png,%
	species=Pelargonium sidoides,%
	label=fig:KaplandPelargonie]{%
	Distribution of Pelargonium sidoides. Die maps was created from data
	available via Global Biodiversity Information Facility database.  The
	distribution is restricted to regions in Lesotho and South Africa.
	(Rot).}

This is the starred version of the command with gives you a two column version of the distribution map. Here an additional panel is used to display the species name and a picture because species name and a picture are given.