Analysis of the simulation data. Run the following Jupyter notebooks in order:
- 1-data-parsing
- 2-network-properties
- 3-super-spreader-analysis
The diffusion analysis needs be run in R:
- 4-risk-prediction
The file requirements.txt list all the packages needed by these notebooks. It is recommended to use conda to create an environment with all this packages.
First, install miniconda (or anaconda):
https://docs.anaconda.com/free/miniconda/
Clone this repo:
git clone https://github.com/colabobio/epigames-analysis.git
And the create the environment installing the listed requirements from the conda-forge channel:
cd epigames-analysis
conda create --name epigames --file requirements.txt --channel conda-forge